FMO05976.5prime Sequence
1136 bp (1026 high quality bases) assembled on 2008-09-15
> FMO05976.5prime
CAGTCGACATGAAATTGGATGAAATAGTTGCATGGTACCAGAAGAGAATC
GGCACCTATGACAAGCAAGAATGGGAAAAGACCGTCGAACAGAGGATATT
GGACGGCTTCAATAGTGTCAATTTAAAAAACACCAAGCTGAAGACGGAGC
TAATCGATGTGGACTTGGTGCGAGGTTCCACGTTCCCTAAGGCCAAGCCC
AAGCAGTCGTTACTCACTGTGATACGCCTGGCCATTCTGCGCTATGTCCT
GCTGCCCCTCTATGCCCAGTGGTGGGTCAAGCAGACCACGCCAAACGCCT
TCGGCTTCATCCTTGTGCTTTACCTCACACAGTTAACCAACTGGGCTATC
TACGTGCTTCACAGCAGTCGCATAGTGCCCCTTGACTATGAGAAGCCGCC
AAATGGAACCCTGCTTCAGGCAGAGGCAGATGGAGATGCCTCCGATAAGG
ATGCAGATAAGGAGTCCGAGGAACATGCCGCCCTCCTCAGTGCCCTGCTT
ATTCCGTGCGCCCTAAGCTTGCTGATCAGTCTCATCCACTCACAAATTGT
AGCCACTAACACCGCCTCGGGTGTCTCTGGCGGGAGTAGCAAGAACAAGC
TGCGTCGCATATCTGCAAGCTACTTAAGCGACAAAGCAGCAACCAGGGAG
AACCGGGTGCGACGTCGCAAGAAGATTGTGCGAGTTCGACAAGTGGAGGC
TGACTTGTCCCAGGCCAGCAGTAACATATCACTTCCAAACAGAAGAACCG
CAACCAGCACAATCGAAGTTCTTCCCAGACCGGTCACGCCTTTGCCTTCA
CCAACAGTTACCTGTGCCACGGTGCCAGACCCCACCACGCCGACTACGCC
TTCGCCATCTGTTATCAGCGGAGCACCAACGAGGAGACCTATTTGACAAC
GACTGCATCAGCCCACTAACGCAACCGCTGGCAGCCATAGACGCATGCTA
CGATCTCAGCAAAAGGCAGGGGGAGCTGCTCCGAAAGCCCAAAAGCGCAA
CGTCAACTGGCACACGCTAATCAGAATAACGCTACTACGGCTGGGCGAAA
AGCCGTGCTCAACAAAAAGTCCCAAAGAAAGTGCGCCTGATCGTTGGAAA
AGATTGGTTCCGTCAGCCAACTTCAGACCGTCGACA
FMO05976.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:57:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| phtf-RA | 3336 | CG3268-RA | 291..1413 | 9..1115 | 5120 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:57:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6743035..6743544 | 173..682 | 2550 | 100 | Plus |
| 2R | 25286936 | 2R | 6743592..6743979 | 682..1060 | 1450 | 96.4 | Plus |
| 2R | 25286936 | 2R | 6742840..6742982 | 34..176 | 715 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:57:09 has no hits.
FMO05976.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:32 Download gff for
FMO05976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phtf-RA | 291..1422 | 9..1122 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:59:33 Download gff for
FMO05976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phtf-RA | 323..1454 | 9..1122 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:27 Download gff for
FMO05976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phtf-RA | 291..1422 | 9..1122 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:27 Download gff for
FMO05976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6742841..6742980 | 35..174 | 100 | -> | Plus |
| 2R | 6742744..6742769 | 9..34 | 100 | -> | Plus |
| 2R | 6743037..6743544 | 175..682 | 100 | -> | Plus |
| 2R | 6743593..6744050 | 683..1122 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:32 Download gff for
FMO05976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2630346..2630485 | 35..174 | 100 | -> | Plus |
| arm_2R | 2630249..2630274 | 9..34 | 100 | -> | Plus |
| arm_2R | 2630542..2631049 | 175..682 | 100 | -> | Plus |
| arm_2R | 2631098..2631555 | 683..1122 | 94 | | Plus |
