FMO05978.5prime Sequence
889 bp (843 high quality bases) assembled on 2008-09-15
> FMO05978.5prime
CAGTCGACATGATTGCCAACTTGGCGTTGCCTTTCCTGCTGATGATCGCG
GAAGCAGCAGCCACCGCGGAGCAGGTGAAGTACCTGGAGTACCTGCAATC
TTCGCCGGCGGAGCACCGGCTTAGCAAACGCATGGATCTGGAGGTGTGCA
TAGGTCATTTTGATGTGCATAAGAACACCATTATTCGCACGGGAGAGTCG
CAGGCGATTGGTGGCAAGTACCTCCAGGGCATTGAGCTGGACACCATCGA
GGAATGCGAAAGGCTGTGCTGCGAGACGGACGCCTGCGATGTGTACATCT
TCGAGCGGAAGGCGGGTGGCTATTGCTACCTCTTCGAGTGCGGTCCTCCG
GAGGATTTCCGCTGCAAGTTCACCAGGCACGCCAACTACACGAGTGCCGT
GCTGAATCCACAGCCAAAGCCAGTCGGTGAGCTGGTGACCACACCGCGTC
CGCAGTTGCCCCACATCCCCAGCAACAATGTGTCGCAGCAGGAATGGGAG
CTGAGCAACCTGAAGCTAAAGCCGGAAGCGCGCGACAAGCCCACTGTTTC
CACCGCCGCAGTGGTGGCTCCCACATCGGGAACGGGAACGGGAACGGGAG
TGGGTCTGGGGAGTGGGCCAGTCGCCAGTTTACCAATCGCAAAGTGTTCC
CGCCGCGCATTGTGGACGCTTCCAGTTCACCTGCCACTCCGGCGAGTGCA
TCGCGGTGTACAATGCCTGCGATGGATTATCCCAGTGCGAGGATGGCAGC
GACGAGGGACCGGAATGCAACATCGTGCTTGTCGACGGCCACAAAACCGG
CCCTACCAGCAGTATTTGGAGCCCGTGAAGCCGATGGTGTCGCAGTATGT
GCCGTGCAGACGTGCAACTGACATGAAGTCGTGGACCAG
FMO05978.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:10:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6495-RA | 2581 | CG6495-RA | 387..1257 | 5..873 | 4140 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:10:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10761825..10762318 | 152..646 | 2425 | 99.8 | Plus |
| 2L | 23513712 | 2L | 10761502..10761652 | 5..155 | 740 | 99.3 | Plus |
| 2L | 23513712 | 2L | 10762525..10762644 | 646..765 | 570 | 98.3 | Plus |
| 2L | 23513712 | 2L | 10762716..10762804 | 766..853 | 285 | 95.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:10:19 has no hits.
FMO05978.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:55 Download gff for
FMO05978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6495-RA | 384..1257 | 1..873 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:59:35 Download gff for
FMO05978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6495-RA | 353..1226 | 1..873 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:56 Download gff for
FMO05978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6495-RA | 384..1257 | 1..873 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:56 Download gff for
FMO05978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10762526..10762644 | 647..765 | 98 | -> | Plus |
| 2L | 10762716..10762826 | 766..873 | 93 | | Plus |
| 2L | 10761499..10761650 | 1..153 | 98 | -> | Plus |
| 2L | 10761827..10762318 | 154..646 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:55 Download gff for
FMO05978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10761499..10761650 | 1..153 | 98 | -> | Plus |
| arm_2L | 10761827..10762318 | 154..646 | 99 | -> | Plus |
| arm_2L | 10762526..10762644 | 647..765 | 98 | -> | Plus |
| arm_2L | 10762716..10762826 | 766..873 | 93 | | Plus |
