FMO05979.5prime Sequence
1180 bp (1007 high quality bases) assembled on 2008-09-15
> FMO05979.5prime
CAGTCGACATGGAAAAATCCAGCTTAACGGAGAAGAATCACACCCAAGTG
TACAATGACACAACGAAGCCAAAGAAGCCCAAGCGTCGCGACAAGAGCGA
TCTGGGTCCGGATTTTGTGGCGCCCGACGGGGGATGGGGCTGGGTGGTCT
GTCTGGCAGCCGGTTTGAATAACTTCTTCCTTTTCCCGGCTCTGCAGCAG
TATGGCCTGATCTACAGGGTGCGGATGCAATCGCTGGGCTTCGATGCCAA
GCAAACCACGACCATTGTGAACGTGGTGATGGCAATCTCCTCGCTAGTGG
GCATTGTCAATGGCGCCATGTTCCGGCGGTTCACATTCCGTCAGGTGGCC
CTGACCGGCACCAGTCTGGCCTTCCTGGGCGTCTTCTTGTCGGCCTTTTG
CACCACCTTCTGGCAGTATATCATCTGTCTGTCGGCGATATTTGGTATCG
GTTTGGGTCTTGCCATGGCCGCCACCTCACTGGCGGTCAATACGTACTTC
AAGCTGAAGAGGCGTCGTGCCACGGGTTTCTCGTGGACGATCACTGGCCT
GGGACCCATATTCTTTCCGCAGGTGTCTACCGTCCTGTTGGGCTACTATG
GTGCCCAGGGCACCATTCTGATCTATGCTGGAATCGCCATGAATGCCATT
CTCTGCGCTTTGACCCTGCAACCCGTACTTTGGCATGTGAAGAAGCCCGA
AAAAACCAGTTCACAATACAATCGAGGGAATTGCCCGAGACGGAGAAGCT
GCAACCAGAACTTTTGGAGGCCAATGGCAATCTGTTGTCGCCCAGCAATG
ATCCGTGGAAGGATTACGAGTGCAAGTACTGTCAGTATCAGAAACGTTCT
AAGCGAGGCCTTTCTCGTCCCATACTTCTTCAATGTCGATGATCCCGAGA
GGCCGGGGTACGAGATCACCGAGCCAGGAACTCCCATGTTCGCCTCGCGC
CATGACGGTTGGTCCGGGTCGAAGCTCCCCCTGACCTCGGAGACGGCGGG
AGAACTCGCTCTCGCACTCGTCAAGCTCTGATGCGTCAGTTTCATCCGAA
ATCCTGAAATCTTGATGACTGACAGAATCGTCTTGACCAAGGGTCGAACC
TTCCATCCGCTGCGGCCTGTACAAGCCAACTACTTCAATCGGGGACGCGA
GAATCTCTATCGCTGCCCACAAGAACATCT
FMO05979.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:10:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| out-RB | 3414 | CG8062-RB | 469..1633 | 9..1164 | 5160 | 97 | Plus |
| out-RA | 2902 | CG8062-RA | 469..1633 | 9..1164 | 5160 | 97 | Plus |
| CG8051-RB | 2278 | CG8051-RB | 381..439 | 90..148 | 220 | 91.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:10:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19312357..19313230 | 1164..300 | 3340 | 95.8 | Minus |
| X | 23542271 | X | 19313525..19313689 | 173..9 | 825 | 100 | Minus |
| X | 23542271 | X | 19313311..19313438 | 301..174 | 640 | 100 | Minus |
| X | 23542271 | X | 19303662..19303720 | 148..90 | 220 | 91.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:10:51 has no hits.
FMO05979.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:37 Download gff for
FMO05979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| out-RA | 421..1592 | 1..1164 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:59:36 Download gff for
FMO05979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8062-RA | 421..1592 | 1..1164 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:02:16 Download gff for
FMO05979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| out-RA | 462..1633 | 1..1164 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:02:16 Download gff for
FMO05979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19312357..19313229 | 301..1164 | 96 | <- | Minus |
| X | 19313312..19313438 | 174..300 | 100 | <- | Minus |
| X | 19313525..19313693 | 1..173 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:37 Download gff for
FMO05979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19207558..19207726 | 1..173 | 97 | | Minus |
| arm_X | 19206390..19207262 | 301..1164 | 96 | <- | Minus |
| arm_X | 19207345..19207471 | 174..300 | 100 | <- | Minus |
