FMO05981.5prime Sequence
1154 bp (1029 high quality bases) assembled on 2008-09-15
> FMO05981.5prime
CAGTCGACATGATGCGATACTCGGAAATCTCACGCGACCTGTCCACGGAT
AATCTGCGCTACTCAGAGTTAAGCAGAAAGCCCACCACGGACTATAATGG
ATATACGGGTCAGGCCTATGCCGCGACTCAATTCAAGCAGAGCTCACCTC
CTCCTCCTCCTTCACAACAGCAGCAGCAGCCAACTCGGGTGTCCAAGCAA
CGAAGTCCGAATACCAATGGTAGTGCCCACACCATGGCCTGTTTGCGCCA
GGAGAAGACCTACAAGGAGCAGCAAATGGAACCGCCCAGTATGCAACCGC
AGGCCAGCAAAACTCTAAATATCAAGAGCACGCGCCGCAAGAATTCCATC
GGTTGTTTGAATAGTTTCTCCTCCTCGCCAGATTCGCCTGGTTGCTACTA
CACTATAGCAGCCTCGGCAGCACCACCGTCCAAGTCGCAAAGTTTACCAG
CCCACGCCTCCATCAAGCAGTTGGATGCGGTTATTTTGAGCGCGTTACGT
GTACCCGCCGATGTGTTGGCTAATCAGATTACGCTACTGGATTTCCCAGT
CTTTGCCCAGATCCAACCGGATGAGCTGAGCAGTTGTGCGTGGACGAAAA
AGGATAAGCATGTCAATACGCCGAACATTGTGGCATTTACTAAGCGATTT
AACCACACGAGCTTTTGGACAGTCCAGGAGATTCTCAATGCCGAGCAGCC
AAAGCAGAGAGCCGAGATTATTACACACTTTATAAAGGTGGCCAAAAAAC
TCCACGAGCTCAACAATCTGCACTCGCTGTTTGCCATTATTTCGGCCATG
CAAAGCGCCAGCATATATCGCCTAACTAAAACCTGGGCTTGCTTATCGAA
AAGGATCGAAATGCATTCGATCGCCTCAGCGATATATTCAGTGATCAGGA
CAACTGGGCGATCTGCGCTCCTACCTCGAGAGCCTCGCCTGCCCTGCATC
CCCTATCTGGGTCTCTTTCTCACGATCTGATCTACATCGATTTGGCCACC
CACATAAGGCGGATGGAGCCGAGCAGCGTCGCAATAGATGAACAAATATA
TTGCTGTATTTCGACTATCAACAGTCGAACTTATAGCATTTGCCAAGCTG
AGCGACACCAAAGTATTGACCTCGTAGGTATAGAGATGCCGAACTTTCCA
GAGG
FMO05981.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:27:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5522-RF | 3478 | CG5522-RF | 359..1504 | 8..1136 | 5155 | 97.8 | Plus |
| CG5522-RB | 3589 | CG5522-RB | 359..1504 | 8..1136 | 5155 | 97.8 | Plus |
| CG5522-RE | 3627 | CG5522-RE | 397..1542 | 8..1136 | 5155 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:27:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16788324..16788666 | 67..409 | 1715 | 100 | Plus |
| 2R | 25286936 | 2R | 16788791..16789121 | 410..740 | 1655 | 100 | Plus |
| 2R | 25286936 | 2R | 16789182..16789550 | 736..1093 | 1155 | 95.7 | Plus |
| 2R | 25286936 | 2R | 16788200..16788260 | 8..68 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:27:20 has no hits.
FMO05981.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:33:16 Download gff for
FMO05981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5522-RE | 393..1504 | 1..1102 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:59:39 Download gff for
FMO05981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5522-RC | 231..1342 | 1..1102 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:23:18 Download gff for
FMO05981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5522-RE | 393..1504 | 1..1102 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:23:18 Download gff for
FMO05981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16788196..16788260 | 1..68 | 94 | -> | Plus |
| 2R | 16788326..16788666 | 69..409 | 100 | -> | Plus |
| 2R | 16788791..16789118 | 410..737 | 100 | -> | Plus |
| 2R | 16789184..16789548 | 738..1091 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:33:16 Download gff for
FMO05981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12675701..12675765 | 1..68 | 94 | -> | Plus |
| arm_2R | 12675831..12676171 | 69..409 | 100 | -> | Plus |
| arm_2R | 12676296..12676623 | 410..737 | 100 | -> | Plus |
| arm_2R | 12676689..12677053 | 738..1091 | 95 | -> | Plus |
