Clone FMO05988 Report

Search the DGRC for FMO05988

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:59
Well:88
Vector:pMK33-CFH-BD
Associated Gene/TranscriptmRpL4-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO05988.5prime Sequence

762 bp (750 high quality bases) assembled on 2008-09-15

> FMO05988.5prime
CAGTCGACATGTTGAACAATATTTTAAAAACATCCAGGCAGGTGCTTTAT
CCCGTAGCAAGGACTTTCAGCCGCAGCGGCAACCACGGCAATGTGGTGAC
CGAAGCCGCTGCGACAGTGGGCGCACCTCCGGCCACAAGATCACCCCTTA
TTCTGCCGCAAGATTACACAGATTGCTTGCCGGTGAGCAGGAACACGGCG
CGCCAGGCATGGATTGAGAACACGGATGCTGTGGCGGAGCGAAAGGTTGG
CCTGATTGAACTGCATCCGGATGTCTTTGCCGCCCAGCCGCGCGTGGACA
TCATACAGGAGAATGTGGAGTGGCAGAGCAAGTATCGTTATGTAAGCATG
GCGCACACCAAAACTCGAGCGGAGGTGCGCGGTGGTGGTCGGAAGCCGTG
GCCCCAAAAGGGAGGTGGTCGTGCCCGCCACGGTTCCCTCCGTTCGCCCA
TGCTGAAGGGCGGCGGCGTATTGCACGGACCCAGGTCGCCTACGACCCAT
TTTTACATGCTGCCCTTCTATAAGAGGGTTTTAGGATTGACCTCCACGCT
GAGTGTTAAGCTGGCCCAGGATGATCTGCACATCATCGATAATGTGGACA
TACCCACCGGAGATGCAGAGTTCCTTAAGGATTTAATCGCCGAACGGAAT
TGGGGACCTTCTGTTTTGATTGTAGACAAAACCATATGTTCCCCGCCAAT
ATTTGCCAGGCTAGCATGATCTGGGCTATGTCAACCTGATGCCAACCTTT
GGCTTGAACGTC

FMO05988.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:14
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL4-RA 1012 CG5818-RA 51..806 9..762 3700 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16328414..16329082 677..9 3330 99.9 Minus
2L 23513712 2L 16328265..16328347 762..681 365 98.8 Minus
Blast to na_te.dros performed on 2014-11-28 19:43:14 has no hits.

FMO05988.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:50 Download gff for FMO05988.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL4-RA 44..806 1..762 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:59:46 Download gff for FMO05988.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL4-RA 40..802 1..762 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:18 Download gff for FMO05988.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL4-RA 44..806 1..762 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:18 Download gff for FMO05988.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16328265..16328347 681..762 98 <- Minus
2L 16328408..16329088 1..680 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:50 Download gff for FMO05988.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16328265..16328347 681..762 98 <- Minus
arm_2L 16328408..16329088 1..680 98   Minus