FMO05992.5prime Sequence
473 bp (-61 high quality bases) assembled on 2008-09-15
> FMO05992.5prime
CCATAAGACGAAGTTATCAGTCGACATGCTGAGTTTGCTGCATGGAAAGA
GCGTGGAACCGCACCTGCTGATGAGGCGTATTCCACTGGAACAGGTTCCG
GAGGATGAGAAGGAGGCGGCCGCCTGGCTGCAGAACCTGTTCGTGGAGAA
GGACAAGATCATCGATAGCTTCCTGGAGACGGGCAGCTTCTTTAAGACGT
CCGGCATAAAGGAGGTTCCGGCATATGTGAATAAACGCCGGCTGTGCTCA
CTCGTGAACTTTGTCTGCTGGGCGGTATTCTCTCTGTCCTGCATTTTCTA
CTACGTGATCACATCCCTGCTGGCGGCCAACTGGACGGCCTTTATCACCG
CACTTTCCGTCCTGGGACTTTTTTACTGGCTCATGGGTCAGGCCATCAAC
AAGACGCAGATCAGCAAGGCATCTAATTATGGATCCTCCAAGTCGGTCGC
CAAAGGCAAGCTTTCTAGACCAT
FMO05992.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:57:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4729-RE | 1849 | CG4729-RE | 1118..1542 | 26..450 | 2125 | 100 | Plus |
| CG4729-RD | 845 | CG4729-RD | 114..538 | 26..450 | 2125 | 100 | Plus |
| CG4729-RB | 1672 | CG4729-RB | 941..1365 | 26..450 | 2125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:57:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16382382..16382727 | 371..26 | 1730 | 100 | Minus |
| 3L | 28110227 | 3L | 16382079..16382157 | 450..372 | 395 | 100 | Minus |
| 3L | 28110227 | 3L | 16379425..16379558 | 216..83 | 325 | 82.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:57:15 has no hits.
FMO05992.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:36 Download gff for
FMO05992.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4729-RB | 941..1377 | 26..465 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:59:51 Download gff for
FMO05992.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4729-RB | 941..1377 | 26..465 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:32 Download gff for
FMO05992.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4729-RB | 941..1377 | 26..465 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:32 Download gff for
FMO05992.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16382067..16382157 | 372..465 | 95 | <- | Minus |
| 3L | 16382382..16382727 | 26..371 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:36 Download gff for
FMO05992.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16375167..16375257 | 372..465 | 95 | <- | Minus |
| arm_3L | 16375482..16375827 | 26..371 | 100 | | Minus |
