FMO06001.5prime Sequence
1227 bp (1010 high quality bases) assembled on 2008-09-09
> FMO06001.5prime
CAGTCGACATGGAAACAATATTGAACACGCAGTTCGATCAGCTGCAAAAG
GCCATAGAGGGAATTAAGGAGGCGAAGAGCAAGGGGCAATCGACGGATGA
GGCTCGCATTGCCACCACCTTGATGTTCGTGGCTCTGAAGCACGCCAACC
GCGAGGTGAAGCACAAGATCAAAGCGGGGCGCGACAAGCTGCACCTGGAA
AAGTGCAAGGTGGACCTCAGCCGGCTGCAGCTGCAGAATCTTCTGTACGA
AGTGAGCCACCTGAAGAAGGAGATTGTGCGCTGCCAGAAGTTCAAGAGCA
GGGACACCAGCTTGGAGCTGCTCTCGGAAGCCGAGTACTCCAGCGAGCTG
CCAGACATGCCCAACGACGCGGAGGAGCTGTCCAGCCACAAGCAGCACCT
TCATCGCCTCGACTGCGAGCTGCGTCTGCGGAAGGCACTCGACAAGCAGT
ACAGCGCCCTGCTGAGCTCCAAGCAGGAACTGCTCCAGGACAATCTTAGC
CACGCCCAGCGGTACGTCTCCTTCGCACCCGCCTTGCGCACTCTGCAGAG
CGCCACAAAGCCGCTGCACGATGCACTCCAGCTATCCCTGGACGTGGAAT
GGAAGCTAAGCGCAGTGGTCAAGTACCTGCCCAAGCCGCTCTACGTTTTG
TTCATTGTCCTGCAATCGCTGCAGCGGGTCAGCGAGGAGCAGTCCTTCAC
CGCCGAGGTGGTTGGCTATGAGAGCGAGGCTCAAATGCAGAGTTGCTTAA
GGAGAAAAAGTGCTCCACATTGAACTACAGACAGACTAAAAAGGAAAGTG
GAGACCGGGAAAAGATTGCCGATAAAAACAACTGGGACGACTCACTCGCT
CCTCACCCACTACACATTTGTTTGACGATTGGAGCGGCTGGATCGAATCA
GCTCGTTTTGCAGATTCGCTACTTTGATTTTATCAAGTGTGCCACTGTCT
GGGGCCAACTTAACTGCTCCAGGAATGCCAACGGCCAGGGTGAAACAAAC
TTTTGTTCACCACCTTATTGCGCATTTGTACCCATTGACTTGGGCAAATG
AATTACCAATCCGGAATCCATACCGCTTACGAAGCCTCGGATTTACCAGC
CGAGAAATGTGTGCCTTCCTCTAAGTCAGATCTACGCAACCTTCTGTGGC
GTCAGTATGTCCATGCACCGCTCAACGTTCCTAGCTGTCAAAACCCAAAC
GTATACTTAATAATACCACCAGGGAGA
FMO06001.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:48:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| thoc5-RA | 2035 | CG2980-RA | 74..1181 | 9..1114 | 5160 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:48:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23954297..23955093 | 82..877 | 3920 | 99.7 | Plus |
| 2R | 25286936 | 2R | 23955147..23955260 | 877..990 | 570 | 100 | Plus |
| 2R | 25286936 | 2R | 23954164..23954239 | 9..84 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:48:18 has no hits.
FMO06001.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:47 Download gff for
FMO06001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| thoc5-RA | 74..1192 | 9..1125 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-09 11:01:41 Download gff for
FMO06001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| thoc5-RA | 72..1190 | 9..1125 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:27 Download gff for
FMO06001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| thoc5-RA | 74..1192 | 9..1125 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:27 Download gff for
FMO06001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23954164..23954238 | 9..83 | 100 | -> | Plus |
| 2R | 23954299..23955093 | 84..877 | 99 | -> | Plus |
| 2R | 23955148..23955260 | 878..990 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:47 Download gff for
FMO06001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19841687..19841761 | 9..83 | 100 | -> | Plus |
| arm_2R | 19841822..19842616 | 84..877 | 99 | -> | Plus |
| arm_2R | 19842671..19842783 | 878..990 | 100 | -> | Plus |
