FMO06002.5prime Sequence
1127 bp (974 high quality bases) assembled on 2008-09-09
> FMO06002.5prime
CAGTCGACATGGAGCGGCCACAGAAGATGCCCAAGGTGGCCAAGGTCAAA
AACAAAGCGCCGGCGGAGGTGCAAATTACGGCGGAGCAGTTGCTCCGTGA
GGCCAAGGAGCGAGATCTGGAGATTCTGCCGCCGCCGCCAAAGCAGAAGA
TCTCCGATCCCGCCGAGTTGGCAGACTATCAGCAGCGGAAGCGAAAGACC
TTCGAGGACAATCTCCGCAAGAACCGCATGGTAGTCAGCCATTGGATCAA
ATATGCTCAGTGGGAGGAGCAGCAGCAGGAGATCCAGCGGGCGCGCTCTA
TCTGGGAGCGGGCGTTGGACAATGAGCACCGGAACGTGACCCTCTGGCTG
AAATACGCCGAGATGGAGATGAAGAACAAGCAGGTGAATCATGCTCGCAA
TCTGTGGGATCGGGCAGTGACCATCATGCCGCGAGTCAACCAGTTCTGGT
ACAAGTACACCTACATGGAGGAGATGCTGGAGAATGTGGCAGGGGCGCGA
CAGGTGTTCGAGCGCTGGATGGAGTGGCAACCGGAGGAGCAGGCCTGGCA
GACCTACGTCAACTTCGAGCTGCGCTACAAGGAGATCGACCGGGCACGGG
AGATCTACGAGCGATTTGTCTATGTGCACCCGGACGTGAAGAACTGGATA
AAGTTCGCCCGCTTTGAGGAGTCTCATGGGTTTATCCACGGCTCTCGGCG
GGTATTTGAGCGCGCTGTGGGAGTTCTTTGGTGACGACTACATCGAGGAG
CGCCTGTTCATCGCCTTTGCACGTTTCGAGGAGGGTCAAAGGAGCACGAC
AGGCGCGCATCATCTACAAGTACGCTTTAAATCACCTACCTAAAGATCGC
ACACAGGAGCTGTTCAAGGCCTATACGAAACACTAGAAAAGTACGGCGAA
CGAGCGGGTATTGAGGATGTGATTGTTCCAAGCGAAGTACCAGTACGAGC
AGAAGGTGGCCGCCAATCCCACCACTACGATGCCTGGTTCGACTATTTGC
GCTGGATGAGGCTGAGGCGATCGGGAATCAGATCCGGTGAGACGTACGAA
CGGGTCAATTTCCAACTGCGCCTGCAAATGAAAAGAACTTCTGGGCGACG
CCTACATTTACCTTGGATCCATAAGCG
FMO06002.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| crn-RA | 2332 | CG3193-RA | 120..1236 | 8..1119 | 5070 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2248714..2249771 | 1094..43 | 4510 | 97.6 | Minus |
| X | 23542271 | X | 2249826..2249864 | 46..8 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:41:23 has no hits.
FMO06002.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:38 Download gff for
FMO06002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crn-RA | 115..1243 | 1..1127 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-09 11:01:42 Download gff for
FMO06002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crn-RA | 113..1241 | 1..1127 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:47 Download gff for
FMO06002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crn-RA | 115..1243 | 1..1127 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:47 Download gff for
FMO06002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2248681..2249769 | 45..1127 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:38 Download gff for
FMO06002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2142714..2143802 | 45..1127 | 97 | <- | Minus |
