FMO06003.5prime Sequence
1076 bp (850 high quality bases) assembled on 2008-09-15
> FMO06003.5prime
ACGTTGGCAGCGGCTCCACCAAGCGGCCCAAGGAGAAGGTGGTCTATATA
TATGAGCTGTTGTGCCGGGGCGAGGATCCCAGCAGCGAGAGTCCCGAATT
TTGGAACGAGTTCTTCCTGCTGCAGCCGAACTTCGAGGCGCTGGAGAATG
AGATTGGCAAACTCAACAACGAGCAGCTGCAGCTGGTGAAACCGAACCTG
AACACCCTCTTCCAGAGGTGCATCGAAATGCTTGACACGGATCATCCTAA
GCGGCTGTGCAACAGCCTACACACGCTGTGCTCCCTGTTCTACGGGATCT
TTAAGAAGTCCAACGCAGAACCAACATTAAACATCCTAAACGAGATCTTC
GGCCATGAGAAGATGGACGAATGGCTGAAGCTACTCATGCAGTACTGCAA
TCGCATCCTCCTGGGCGATGTGCCCGAAAACGCTCGATTTATGTGCCTCA
AACTGCTGCAGGTTCTGGTTACGGGCACGGATAACGTCAACCAGAACGCC
CTCTTCGAGCATCTAATGATGCACAGCATGTTCGACGCCTTTGTTCGGCT
ACTCAGTGATCCTACGTTCCCGTAGCCAGCATGGACACGACATCGTTATC
CTACTTACTATCCTGGTCAACTATCGCAAGCATGAAGCCACTAACCCCTA
TGTGGTGCAGCTCTCCATACTCGCTGATGAGCTGGCTTTAAATGGCTATG
GCCAAATGATATCGCAATCGCTAATTGATCTCTGTCGCCAGTACATTCAG
AGCCTTAACAATGTGCAATCCTCTTCCTGGTTTTCGTCGCTGTCAATATT
GTGGGCAACATGTTTGTGTCGGATGAAAGATGCGACGAGTGCAGCAGATC
AAGCGAATAATGCCCTCTACTTGCCCTCTACGAGGCATGCACTGAATCGA
ACTTCATCCCACTCTGGCTCACACCAAGCCAAGTCATGCCCGCCCTCGCC
AGTAAACACATGATCTGCCCACCTGTGCCGGATCTATCTAATGCACCACC
ATGACATACCCAGTTTCCCACCATTGCTGGTGTCCGATTTCATATCTGTC
ATCGGATGCAGGAACATAGAACGAAT
FMO06003.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8379-RA | 2447 | CG8379-RA | 165..1261 | 5..1076 | 4525 | 95.9 | Plus |
| CG8379-RB | 2450 | CG8379-RB | 165..1264 | 5..1076 | 4485 | 95.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8824954..8825408 | 240..695 | 2230 | 99.8 | Plus |
| 3R | 32079331 | 3R | 8824686..8824889 | 37..240 | 1020 | 100 | Plus |
| 3R | 32079331 | 3R | 8825632..8825828 | 695..887 | 725 | 95.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:42:39 has no hits.
FMO06003.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:27 Download gff for
FMO06003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8379-RA | 163..1192 | 1..1014 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:55:51 Download gff for
FMO06003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8379-RA | 164..1193 | 1..1014 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:03 Download gff for
FMO06003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8379-RA | 163..1192 | 1..1014 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:03 Download gff for
FMO06003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8824573..8824608 | 1..38 | 94 | -> | Plus |
| 3R | 8824688..8824889 | 39..240 | 100 | -> | Plus |
| 3R | 8824955..8825408 | 241..695 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:27 Download gff for
FMO06003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4650295..4650330 | 1..38 | 94 | -> | Plus |
| arm_3R | 4650410..4650611 | 39..240 | 100 | -> | Plus |
| arm_3R | 4650677..4651130 | 241..695 | 99 | -> | Plus |
