FMO06004.5prime Sequence
1204 bp (1020 high quality bases) assembled on 2008-09-09
> FMO06004.5prime
CAGTCGACATGGCCACGACAAGATCCGCCGGAGGTGCCGCCACGTCCGTT
GATACTGGACCGGCAGCAGGGAACTCGGGTATCAGAAAGCTATCGACGGC
TAGCGTCGGTGGAATTGCCGGAGGAGTGGCGCCCAGCTGGCAGAGCTGCT
ACTACTGCACCCGGGAGCACTTTAAAAGCATCAGCGACTTCGTCAATCAC
CTGCGAAATCGTCACTGTACCCGGGAGGGTGGCTCATTTGTGTGCCGCTA
TGGCTTCAATGGAGTATGTGCCTCGCTTCCACTGGACGGAGTCTCAGATC
GCGATTACGACGCCCATGTCGCCAAGTACCATGTCAATCAGCACACGCGC
GAAATGCCTCCCGAATGGGGAGTCTACTCGGCGGCCCAAAACCTGCCAGC
GGTGCTCAACGATCCCTCGCGAGGAAAGCAGAGTAATCTGTTTACCAAAA
AGTGGGGCGAGCATTTTGTGGAACGAAGTCATGTGCCCCCATCACCCCGA
TTGCCCGATATAACCCATGCGGATTTTACCGTGTATCTGGGCAGCATAGG
GAAGCGATATCGTTGGCATGAGCGGCGGCAGCAACAACTGGAGCGTGATA
AACCGCTGGAGAATGGAGCACAAGGAGCACCTGGACCGGGAACTGGTGGT
CAGACACCAACACACTTGAGTTCTGTGCCCGAGATCTTTCTGAAATCACA
ACTGCAGCTTCATCATCCGGCAACCTTTAAGCAGGTATTTCCTAATTACA
TGCAAACATCGGCTTCCAGTCCGGAAAGTCATCAGCAAACTGGTCGTCAG
CTGCAGGAACAGCTGAGTCACTACCTGGACATGGTGGAAGTTAAAATAGC
GCAACAGGTATCGCAGAAATCGGCTGCGTTCTTTCACGCCATGACCACGC
AGCACGCTATTCTGGCTGAAATGGAGCAAGCGCCGACCAGTACGTCAGTT
GCGGGCACACTGGCCGAACTCACAGCCACTCGGTGTAGACAGCTTCAAGG
TGCTGCGTTTCGCCAAGAAGACGCACTATACCTCACACTAAAAACTCGAC
TGATGCACCGTAACCAAGACGCACGATGCGCAGCTTCTACTGGCACCAGA
CTATGTGCAGCTGATGGAATGCACACGCAGGAAATCTTCCGCGATCATGG
CATCCTGCTTAACATGCCATAGCACTAGCAAGTGAAACTTATGGACCAAT
ATTT
FMO06004.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scat-RA | 3558 | CG3766-RA | 310..1428 | 9..1107 | 5035 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9432281..9433103 | 197..1014 | 3820 | 99 | Plus |
| 2L | 23513712 | 2L | 9431714..9431901 | 9..196 | 940 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:30:00 has no hits.
FMO06004.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:51:09 Download gff for
FMO06004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scat-RA | 302..1320 | 1..1014 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-09 11:01:45 Download gff for
FMO06004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scat-RA | 300..1318 | 1..1014 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:39 Download gff for
FMO06004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scat-RA | 302..1320 | 1..1014 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:39 Download gff for
FMO06004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9431706..9431901 | 1..196 | 97 | -> | Plus |
| 2L | 9432281..9433103 | 197..1014 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:51:09 Download gff for
FMO06004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9431706..9431901 | 1..196 | 97 | -> | Plus |
| arm_2L | 9432281..9433103 | 197..1014 | 99 | == | Plus |
