FMO06005.5prime Sequence
970 bp (970 high quality bases) assembled on 2008-09-15
> FMO06005.5prime
CAGTCGACATGCCGCGCAGAAAGGCCCTGACTAATAACAACAATGCCGGC
GAAGCGGAGCAGCAGCCACCGAAGGCGAAGCGCGCCAGAATCGCTTTTCA
TCTGGAGCTGCCCAAGCGGAGGACCGTGCTCGGCAACGTGCTAGTCTGCG
GCAACGGCGATGTGGGCCAACTTGGTCTCGGCGAGGACATACTGGAGCGC
AAGCGTCTCAGCCCTGTGGCGGGCATCCCGGATGCCGTGGACATATCCGC
CGGTGGCATGCACAACCTGGTGCTGACCAAGTCAGGGGACATTTACTCAT
TCGGTTGCAATGACGAAGGTGCTCTAGGCCGTGACACCAGCGAGGATGGC
AGCGAGTCAAAGCCGGATCTTATCGATTTGCCCGGCAAGGCTCTGTGCAT
TTCGGCGGGAGACTCGCATTCCGCTTGTCTGCTGGAGGATGGCCGTGTCT
TCGCTTGGGGCTCGTTCCGGGACTCTCATGGCAACATGGGCCTCACCATC
GATGGTAACAAGCGTACGCCCATCGATCTGATGGAGGGCACTGTCTGTTG
TAGCATCGCGTCCGGCGCCGATCATTTGGTCATCCTGACCACTGCCGGAA
AGGTCTTTACCGTGGGCTGCGCTGAGCAGGGACAACTCGGCCGGCTGTCG
GAGCGTTCCATCTCCGGAGAGGGTCGTCGTGGCAAACGCGACTTGCTGCG
GCCCACCCAGCTCATCATCACGCGGGCCAAACCTTTTGAGGCCATCTGGG
CCACCAACTACTGCACATTCATGCGCGAGTCACAGACACAGGTCATCTGG
GCCACAGGGCTTAACAACTTCAAGCAGCTGGCCCACGAGACAAAAGGCAA
GGAGTTCGCACTGACGCCCATCAAGACGGAACTCAAGATATCCGACATAT
TGCCGGCGGTCAGCACCATACTGTCATCCTGACACGGACTTAAATTGTTC
CGTAGTGGTCGTCCGAGTAC
FMO06005.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:10:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcc1-RC | 2085 | CG10480-RC | 125..1090 | 9..970 | 4670 | 99.2 | Plus |
| Rcc1-RB | 2144 | CG10480-RB | 184..1149 | 9..970 | 4670 | 99.2 | Plus |
| Rcc1-RA | 2365 | CG10480-RA | 405..1370 | 9..970 | 4670 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:09:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5931616..5932281 | 674..9 | 3330 | 100 | Minus |
| 3L | 28110227 | 3L | 5931271..5931559 | 958..672 | 1285 | 97.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:09:59 has no hits.
FMO06005.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:44 Download gff for
FMO06005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcc1-RA | 405..1370 | 9..970 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:55:53 Download gff for
FMO06005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bj1-RC | 180..1145 | 9..970 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:46 Download gff for
FMO06005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcc1-RA | 405..1370 | 9..970 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:46 Download gff for
FMO06005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5931257..5931558 | 673..970 | 97 | <- | Minus |
| 3L | 5931618..5932281 | 9..672 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:44 Download gff for
FMO06005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5924357..5924658 | 673..970 | 97 | <- | Minus |
| arm_3L | 5924718..5925381 | 9..672 | 100 | | Minus |
