FMO06006.5prime Sequence
1156 bp (1027 high quality bases) assembled on 2008-09-15
> FMO06006.5prime
CAGTCGACATGGAAACGGAGCACCTGAAACGACTAGAGGCCAAGGAGGCG
GACCACATTCCCGCCATCCTGGACGAATTCAACACAAAGAATGCGGATCT
GCTGGTCTTCGACAGTTTCCGCACAGACAACCTGTGGCACGAACTGTGGC
TGGCCATCTTCGGCATATTGGACGACCAGCGGCTTAGTCATCTGCATACG
CAGTGCCTGAACACGGTGAGGATTCTAACGCGTGACGAGTTCAGCCTGCA
GACGAACTACATCGAACAGGAGGTTAACACCCTGCTGAAGCTGGCTAGGA
TTGAGGCCGGCTCACTAAAGCTGCCAGCCACGCCGGACGAGCTTAAACAG
GAGGAACGCGAGGAGCCCCAGCTGGAGCCCAGCCAGGCCCAATCGGAGGT
GATTGCCGAAGCACTTAAGTGTCTGTGCAACTTGGTCTACCAGAGCTCCG
ACTGCAGGCGCCAGTGCCTGCGGCAACACTGCCTGGATGCAATCCTGAAG
AGGGTGGCGTCCTCGATGCGACATCCCTGTGCGTTGGAGTACTACGACAT
GAAGCTCCTCTTCTTGCTCACTGCATTAGAGCCAGCGGCGCGCTCTCGCC
TCCAAATCGATCTGAATGGCCTCACCTACATGACTAAGTGGCTGGACGAC
AAGCTGGGCGAAGACTCAGTTGGCGAGGAGCAGCTGAACATCATCTGCGA
ACTGCTCAAGGTGATGTTCAACGTGACCAGTGCTCCGGACAAGAGCCCCA
ACGAATACGAAATCCAGAGCTTGCATTTGACGGGAGTGCTGAGGGAGCTA
CTCCTGCGTTTCGGCGACTTGGCCACAGAAAAGGATCGCGCCGTCGTCAC
ACACGCCATCAATCTGCTGACAAACATCCTCCGGCAGCTGCCTGACAGAA
CTCACCCTGCGTTGCTCCCATGCCGAGTTGGAGTCGCACAGGAAGAGAGC
AGGACAACGAGAAGGAAAAGATACGAAGCTGGAACGGGAGCCAACCCGGT
GAGTGCTGCTCGCATGCTCGAAAGCGCATGTTCGGAGTCTGGACGTGCTA
CTCGCTACTAGGCATCTCTGGCCAACAGGAGGCCGAAGCAAGCTCGCATG
AATGCTTTCCCCATGGCTTAACGTGCTGGGTAGTGGCCGCCCACATCGGA
TTAGCT
FMO06006.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ric8a-RB | 2970 | CG15797-RB | 126..1264 | 5..1129 | 5150 | 97.7 | Plus |
| ric8a-RA | 2438 | CG15797-RA | 126..1264 | 5..1129 | 5150 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9256441..9257496 | 88..1129 | 4380 | 97.2 | Plus |
| X | 23542271 | X | 9260754..9261102 | 795..1129 | 815 | 90.9 | Plus |
| X | 23542271 | X | 9260652..9260762 | 597..707 | 465 | 94.6 | Plus |
| X | 23542271 | X | 9256293..9256377 | 5..89 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:05:37 has no hits.
FMO06006.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:51 Download gff for
FMO06006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ric8a-RA | 122..1253 | 1..1118 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:55:55 Download gff for
FMO06006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ric8a-RA | 99..1230 | 1..1118 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:24 Download gff for
FMO06006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ric8a-RA | 122..1253 | 1..1118 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:24 Download gff for
FMO06006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9256289..9256377 | 1..89 | 96 | -> | Plus |
| X | 9256443..9257480 | 90..1113 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:51 Download gff for
FMO06006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9150322..9150410 | 1..89 | 96 | -> | Plus |
| arm_X | 9150476..9151513 | 90..1113 | 97 | -> | Plus |
