FMO06008.5prime Sequence
1150 bp (1017 high quality bases) assembled on 2008-09-15
> FMO06008.5prime
CAGTCGACATGATTAAGTGCCATATGCCTTCGAGTTGGAGACGGCTACGC
AAAATCAGTCGTATTCTAGCGCTGACAGGAAGCAGACAGATACTCACCCA
AGTATTAGCAACCAAAGGAGCAGCAATGGCAGAGGGAGATTCGAAATTTG
GCTTCAAGGACATGGAGAAGGCGTTAGAGACGTTGAAGCTGCTGGAGAGT
CACGACATGCAGTATCGCAAGCTGACGGTGCGCGGTTTGCTTGGCCGGGC
CAAAAGAGTCCTGACAATGACCAAGGCGGAGGAGAAGCTGAAGAACATCA
ATGCGGCCATTGGAGTCTTTGAAAAGTGGCTGGAGGAGAATGGCGGAGGG
GCGTCCAGCAAGAATGCCAAGACAGAGAGCGAGGACAAGGTGGAGACGGT
GCCGGGATTGGGATTCAAGGACAAGGCTGCTGCGGAGGCAACGCTGAGCA
TTTTGGCGGAACGAGATCCGGACTACCAGAGGTTGGCCATCAAGGGATTG
ATTGGCAGCTCCAAGCGTGTCCTGTCAGGCACCAAGAACGAGGACAAGAT
CACGGCCATAAAGGAGGGAGTCCAGGTACTTGAGGATTTCCTCGAAAAGT
TCGAGGCCGAGAATCGTATCAAGGACAATCGAGCATACTTGCCACTCGCC
GTGGTCACCAAACTGCCCGATCCCAAAGATGAGTTGGCTAAGGAGTTTCT
CGAAGCCTATGGCGGCTCCAAGGCCAAGGGTAACTACAAGCACCTGCGCA
CAATGTTTCCCAAAACGGATGAAAAGACCAGCTGGGATATTGTGCGCAAT
CGTCAGCTGTCCAAGTTTGCTGGAGCAGATTAAGAGTTGAGGAGGCCAAG
CTCTTCGATGCAGAGACCGGAGCACCCACCGACCTGCACCTGCAGTTGAT
CCACTGGGCATACAGTCCGCAGCCGGACAAGCTGAAGCAGTACATCGTAA
AGCTGGCCAGAAGACGCCCGGAAAAGCGCAGCAGGAGAGCAGCAGCAGTG
CCAGCGATTCAGTGCCACAGCAGGATTCCGATGGCGAGGAATAAGCCCAA
AAGAGAGAGAGGGAGGGGGCAGCTTTCTAGATCATCGTTTGCGCCGGGTC
CAGGTAATGGTCATAATCATATCATAATCTAATCATATCCACACTAGGCT
FMO06008.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ude-RC | 1473 | CG18410-RC | 46..1092 | 8..1053 | 4985 | 98.9 | Plus |
| Ude-RD | 1517 | CG18410-RD | 1..1001 | 54..1053 | 4770 | 98.9 | Plus |
| Ude-RB | 1382 | CG18410-RB | 1..1001 | 54..1053 | 4770 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24797976..24798583 | 1053..447 | 2590 | 97.2 | Minus |
| 3R | 32079331 | 3R | 24799364..24799623 | 267..8 | 1285 | 99.6 | Minus |
| 3R | 32079331 | 3R | 24799127..24799307 | 448..268 | 905 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:43:17 has no hits.
FMO06008.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:52 Download gff for
FMO06008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ude-RC | 41..1106 | 1..1069 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:56:00 Download gff for
FMO06008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18410-RA | 41..1106 | 1..1069 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:19 Download gff for
FMO06008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ude-RC | 41..1106 | 1..1069 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:19 Download gff for
FMO06008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24797988..24798581 | 449..1040 | 98 | <- | Minus |
| 3R | 24799127..24799307 | 268..448 | 100 | <- | Minus |
| 3R | 24799364..24799627 | 1..267 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:52 Download gff for
FMO06008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20623710..20624303 | 449..1040 | 98 | <- | Minus |
| arm_3R | 20624849..20625029 | 268..448 | 100 | <- | Minus |
| arm_3R | 20625086..20625349 | 1..267 | 98 | | Minus |
