FMO06011.5prime Sequence
1128 bp (268 high quality bases) assembled on 2008-09-09
> FMO06011.5prime
CAGTCGACATGAGATTTATAAATTGGGTACTTCCCCTGCTTCTGGCCACG
TTGGTCGCCCTGCAACAGCCCACACTAACGGACGCTCTGATCGAGGATGT
CCTGGACATCATACATGTGGTCAAAGAGGTCACCTCCGGCGTCCTCAAGG
CCTGGGACATTGTACAATCCTCCCCGTTGGCGGCCAACATTGATTTCCCA
CTGATGCGCGAGAAAAATAAGAAGGTGTTGCACCACCTCAAAGAAGTCAG
CAAGCAAATAGACAATACCGAAGATCAGCACGCTCAATATGTTGCCTTGG
CCATCGAATCGGTGACTAGCTTCATGCACAACAACGCTCCAATTATGGCT
AAGATGAATGATATCTCGGACACGATCAATAGGATCTCATCGCGCTATCA
GCAGATGCACAAGTACGAGGCTTACAAGGACAAGTTGGAGATGTCCACGC
TGATAACGTTTGCGGAGTGGACAGTGTCCCCGAATGCACATTCGGTGCAC
CATCTGATGGATCGTCTGCATATCACTCTACTTGGCAACGAGGATCGATC
TTCCAACACAACGTCCACCAATCTACTCCAACAGCTAGCCACTGCCTATG
AGGTGTCTACCGATCAAATTTGCAATACCATGCAATCGGCCCAGCAGTTT
ATATACTCACTATATGCGGATATAGCCCTGACCGATCTGAAAGCCTACAC
CATGATGGAATTCTCGTGATGATGTTGCAGGGTCTACGGGAAGGGCAACT
ACACCCAGGAGCGGAATCATGCGTTCCCGAATATGAGAAGAGGACGGAAC
GCACACTAAATACTCAAGGATGTGATGCTACGAGCTGATCGTATCGTTTA
CCGCTGTGATCCACGAAACATGTACGGGGAGTCACCTATGACTGAGGTCC
CGCGCCTCCTTCAGGCTCTTTGAAACTGAGTGATTTGAATAAGAGGAATC
TTGCGGAGAGACGTGTGACTATATCATCCACCCGCAGGGAATGCTGCTTT
AAGGATCCCTACTGTTCCGTCAGCTAATGTATGGTCGTCTGAAAAATTGG
AGATCGAAATTCCGAACATGGAGGGGGTGCCGTTCGCCACATGAAATCTC
GCCGGGTGCTCATGGAGTTCCTTGCAGT
FMO06011.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0193-RA | 2453 | CG2206-RA | 233..1279 | 9..1041 | 4485 | 96.3 | Plus |
| l(1)G0193-RB | 2559 | CG2206-RB | 933..1385 | 603..1041 | 1620 | 93 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7945894..7946223 | 604..275 | 1605 | 99.1 | Minus |
| X | 23542271 | X | 7946407..7946676 | 278..9 | 1290 | 98.5 | Minus |
| X | 23542271 | X | 7942802..7943229 | 1018..601 | 1250 | 93 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:55:39 has no hits.
FMO06011.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:00 Download gff for
FMO06011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0193-RA | 229..1279 | 1..1041 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-09 11:01:40 Download gff for
FMO06011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0193-RA | 327..1377 | 1..1041 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:05 Download gff for
FMO06011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0193-RA | 229..1279 | 1..1041 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:05 Download gff for
FMO06011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7942775..7943227 | 603..1041 | 92 | <- | Minus |
| X | 7945896..7946219 | 279..602 | 99 | <- | Minus |
| X | 7946407..7946680 | 1..278 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:00 Download gff for
FMO06011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7836808..7837260 | 603..1041 | 92 | <- | Minus |
| arm_X | 7839929..7840252 | 279..602 | 99 | <- | Minus |
| arm_X | 7840440..7840713 | 1..278 | 97 | | Minus |
