FMO06012.5prime Sequence
1154 bp (1026 high quality bases) assembled on 2008-09-15
> FMO06012.5prime
CAGTCGACATGCCCAAAATGGACAACGAGCAGCCGCATCAAGAGCTAGTG
AAGTGCGTCCTGGTGGGGGACACGGCCGTGGGCAAGACGCGACTGATCTG
CGCGAGGGCCTGCAACAAACACGTCTCGCTATCTCAGCTCCTCTCTACGC
ACGTGCCGACCGTGTGGGCCATTGACCAGTATCGCATATATAAGGATGTA
CTCGAGCGATCATGGGAGGTGGTCGATGGAGTGAATGTCTCACTTCGCCT
ATGGGACACATTTGGTGACCACGACAAGGATCGGCGCTTCGCATACGGCA
GATCCGATGTGGTGCTGCTGTGCTTTTCCATTGCCAGTCCGATTTCCCTG
CGCAACTGCAAGATGATGTGGTATCCGGAAATTCGCCGCTTTTGTCCGGA
TGTTCCCGTCATTCTAGTTGGCTGCAAGAACGACCTGCGCTACATGTATC
GCGACGAGAACTATCTCTCGTATTTCGGCGAGAAGGGAACCTTTGTTCGA
GCCGCGTTGAAGAGTGACCTGGTTATGCCGGATGAGGCGCGTGCCGTCGC
CAAAGAGCTAGGAGTGGCGTACTACGAGACCAGTGTTTTCACATACTTTG
GGGTGAACGAGGTGTTTGAAAACGCCATCCGATCCGCGTTGATTGCACGC
CGACAGCAGCGCTTCTGGATGACAAACCTGAAGAAGGTGCAGAAGCCCCT
GCTGCAGGCGCCGTTCCGGCCACCGAAGCCACCACCACCGGAGGTCACCG
TCATGGTCGGCAACTATCGGCAGGACATCTACAACATGTTCCTGTCGCAG
GCCTACACCGACCTCGTCCTGGTCGGGGCGGGTGGCAACAAGTTCGCCGT
GCACAGGTTCATGCTAGCCGCCGCGTCCAGCATCTTCCAGCGCCTGCTTA
GCACTGAGCTGACTGATATGGGCCGGCGGAGCAGCAGCGAATCTAGCATG
GTCAGCTCAACATTCGGGGAGGCCACCATTGCGGACTTTAACGATGACCA
CGGGAGGCCCTGATCCGCTACGAATCACGCACACAACGAATGGTGGGACC
CTTTGAGCGCCCGCTCCAGCTACCCAGGCGTGGCTCTCATGGAGTCTAAG
CATCACGAATTTGAACAGGGAGCTGCACATCATCCGGTCTCGCAAACATT
CCCC
FMO06012.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:06:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoBTB-RC | 2974 | CG5701-RC | 127..1255 | 8..1139 | 5260 | 98.2 | Plus |
| RhoBTB-RB | 3257 | CG5701-RB | 389..1517 | 8..1139 | 5260 | 98.2 | Plus |
| RhoBTB-RA | 3257 | CG5701-RA | 389..1517 | 8..1139 | 5260 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:06:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20379311..20379848 | 499..1038 | 2575 | 98.9 | Plus |
| 3L | 28110227 | 3L | 20378879..20379079 | 299..499 | 1005 | 100 | Plus |
| 3L | 28110227 | 3L | 20378459..20378650 | 8..199 | 960 | 100 | Plus |
| 3L | 28110227 | 3L | 20378712..20378815 | 198..301 | 520 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:06:23 has no hits.
FMO06012.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:20 Download gff for
FMO06012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoBTB-RA | 384..1533 | 1..1154 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:55:48 Download gff for
FMO06012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoBTB-RA | 414..1563 | 1..1154 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:50 Download gff for
FMO06012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoBTB-RA | 384..1533 | 1..1154 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:50 Download gff for
FMO06012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20378454..20378648 | 1..197 | 97 | -> | Plus |
| 3L | 20378712..20378815 | 198..301 | 100 | -> | Plus |
| 3L | 20378882..20379079 | 302..499 | 100 | -> | Plus |
| 3L | 20379312..20379848 | 500..1038 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:20 Download gff for
FMO06012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20371554..20371748 | 1..197 | 97 | -> | Plus |
| arm_3L | 20371812..20371915 | 198..301 | 100 | -> | Plus |
| arm_3L | 20371982..20372179 | 302..499 | 100 | -> | Plus |
| arm_3L | 20372412..20372948 | 500..1038 | 99 | -> | Plus |
