FMO06014.5prime Sequence
1048 bp (947 high quality bases) assembled on 2008-09-09
> FMO06014.5prime
CAGTCGACATGGCGGGTAAACGTGTTTTGGTCATCGATAATGGATCCTAC
GAATGCCGCGTGGGCTGGAGCGACTCCAAGGAGCCGGACTTGCGGTTCCG
CAATGTGCTGACCAAGCCGCGCAAGGATCGCAAAAAGGAAGCAGCTGCTT
CGGAGGGATCCGCATCGCAGACAACAGTGGAGCAATCTGCCGAGATCCAG
GTGGGCAATGACATCACCAACATCGAGGCGGTGCGTGCGCATCTGAAGAG
TCCATTCGAGCGGAATGTGATAACCAACTGGAATCACCAGGAGCAGATCT
TCGACTACATATTCACCAAGATGGGATTCGATGGACAGGACAAGATCGAC
CACCCAATCATCCTCACAGAGGCGCTGGCCAACCCCAACTTTTGCCGCCA
GCAGATGAACGAGCTGCTCTTCGAGTGCTACGGTATTCCGTCTGTATCCT
ACGGCATAGATGCGCTCTACAGCTGGAAGCATCATCAGCAAAAGCAGAAA
AATATATCCGATGCCCTGATCATTTCCTTTGGCTACAGCACCACCCACGT
CATTCCCGTGTTAGATGGCAAACTCCAGCTGGAGCATGTGCGTCGCCTGA
ATGTGGGTGGCTACCACATCATCACCTACCTCTTCCGGCTCATGCAAATG
AAGTATCCCGTCCATCTGAATGCCATCACCATCAGTCGTATGGAGAAATT
GGTCCATGAGCACTGCCACATTGCTGTTGATTACAAGGAGGAGCTGGTGC
AATGGGCCCAGATGGACTATTACGACGAGCACATAATGAAGATACAACTG
CCGTACAATGCGGTGACCGCCACTAACGCCATGCTAACCGCTGAGCAGAG
CAGGAGAAGCGTCGCGAGCTGGCACATCCTCTGCTGGACATAAAAAAAAA
CGGGGAGCAGAGAAACTGCGCGAGGATGAGCAGCAGTTTATTCGTCTACA
CCAGCTGAGGCAACTGTACGAGCAGAAAAAGCTGGACAAGTTGGACCGAG
CTCTAAGCACAGCAAATTGGTAACTTGAAGGACTGGATTTCCTCATTG
FMO06014.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:27:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arp5-RB | 2080 | CG7940-RB | 83..1127 | 9..1048 | 4905 | 98.4 | Plus |
| Arp5-RA | 2320 | CG7940-RA | 323..1367 | 9..1048 | 4905 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:27:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18185820..18186314 | 9..503 | 2475 | 100 | Plus |
| 3R | 32079331 | 3R | 18186373..18186922 | 504..1048 | 2255 | 96.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:27:08 has no hits.
FMO06014.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:51 Download gff for
FMO06014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp5-RA | 315..1345 | 1..1027 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-09 11:01:59 Download gff for
FMO06014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp5-RA | 294..1324 | 1..1027 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:54 Download gff for
FMO06014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp5-RA | 315..1345 | 1..1027 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:54 Download gff for
FMO06014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18185812..18186314 | 1..503 | 99 | -> | Plus |
| 3R | 18186373..18186900 | 504..1027 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:51 Download gff for
FMO06014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14011534..14012036 | 1..503 | 99 | -> | Plus |
| arm_3R | 14012095..14012622 | 504..1027 | 97 | | Plus |
