FMO06015.5prime Sequence
816 bp (815 high quality bases) assembled on 2008-09-15
> FMO06015.5prime
CAGTCGATATGAAGCTTCTGTTGGTTCTTCCACTTCTGGTGGCTGTGGTC
TCTGGCCAGGGATTCGGAGGCGGTGGATTTGGAGGCGGATTTGGAGGTGG
ACTCGGAGGCGGATTTGGAGGTGGACTCGGAGGCTTGGGCAACAATCGAG
TGGGTGGAGCTTTACAAAATGTGGCCGGCGCCGTTCAGAATGCCGTGGGC
AACATTGCCAAGGCTGTGCCCAAGGTGCCGCTGCTCTCAAACGTCCAGGA
CTTTGGTGACTTCTTGAGCCAATCTGGAAAGACCTATCTCTCCGCCGCTG
ATCGCGCTCTTCATGAAGGTGCCTTCGCTTCCACCAAGAACCTGGTGGAA
GCCGGAAACGCAGCCTTTGCCCAAGGAGTGCACACCTTCAAGCAGGCCGT
GAACGCCTTCGCCGATCTGACCCACTCTGAGTTCCTTAGTCAATTGACCG
GTCTGAAGAGAAGTCCGGAGGCTAAGGCTCGAGCTGCTGCCAGTTTGAAG
TTGGTCAACCTGCCTGCGAAGCCCATCCCGGATGCCTTCGATTGGCGCGA
GCATGGCGGTGTCACACCAGTCAAATTCCAGGGTACCTGTGGCTCCTGTT
GGGCCTTTGCCACCACTGGTGCCATTGAGGGACACACCTTCCCGCAAGAC
CGGCAGCCTGCCCAATCTCTCTGAGCAGAATCTGGTCGACTGTGGTCCGG
TGGAGGACTTTGGGCTGAATGGCTGCGATGGTGGCTTCCAGGAGGCCGCA
TTCTGTTTCATCGATGAGGTGCAAAAGGGTGTGTCCCAGGAGGGGGCCTA
TCCCTACTTTGAAACC
FMO06015.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4847-RE | 1308 | CG4847-RE | 35..838 | 8..812 | 3970 | 99.6 | Plus |
| CG4847-RD | 1501 | CG4847-RD | 228..1031 | 8..812 | 3970 | 99.6 | Plus |
| CG4847-RC | 1313 | CG4847-RC | 40..843 | 8..812 | 3970 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17513050..17513385 | 476..812 | 1605 | 99.1 | Plus |
| 2R | 25286936 | 2R | 17512457..17512715 | 8..266 | 1295 | 100 | Plus |
| 2R | 25286936 | 2R | 17512775..17512985 | 266..476 | 1055 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:02:37 has no hits.
FMO06015.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:51:50 Download gff for
FMO06015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4847-RC | 32..847 | 1..816 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:56:14 Download gff for
FMO06015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4847-RD | 215..1030 | 1..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:39:22 Download gff for
FMO06015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4847-RC | 32..847 | 1..816 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:39:22 Download gff for
FMO06015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17512449..17512715 | 1..266 | 98 | -> | Plus |
| 2R | 17512776..17512984 | 267..475 | 100 | -> | Plus |
| 2R | 17513050..17513389 | 476..816 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:51:50 Download gff for
FMO06015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13399954..13400220 | 1..266 | 98 | -> | Plus |
| arm_2R | 13400281..13400489 | 267..475 | 100 | -> | Plus |
| arm_2R | 13400555..13400894 | 476..816 | 98 | | Plus |
