FMO06016.5prime Sequence
1147 bp (966 high quality bases) assembled on 2008-09-15
> FMO06016.5prime
CAGTCGACATGGAGGCATCAAGAATAACCGCGATCGCCAGCAGTGCAGTG
TCCGTTACCGCTCCCAATCCCCCCACAGTGTCCACCATTCCCACAGCAGC
TGCGAGCACACTAATCCAGGTAGGCGTGTCGCCAGCAACAACAACCATGC
CAACACCAGCAGCCACAACAACAACAACCACAATAGGAAGTACAGCTAGC
AGTGCCGTTGGAATTTCAACGCCGATACGAAATCCCATTTCAAATCTGCA
GATAGAACAGCAAAACGATCAAAAGCGAAGAAGTTCATCGCGGACGATTA
AAAGGAAGCGTTTTGATGACGAAATAGTTGAGTACAACATTGCGGTGCCC
ACAAATCGCAGCGGAACAGACGCCAATCGCAGCAGCAGGCCTCGCACCAC
CTCCCAGAATTATCCAGCTTTGGTGGGCGTGCCGCACACCACGTTAGCGC
CTCTTAACATACCCACTTCCACGCCACAGACGCCGCTTTCAGTTGATTCC
CTGCTGCCGGGGACACCTAGCACTGTTGCATCGCTGTCACTGGCCACGCC
CACAACGCCAGCTCCCTTGGCCACTCCCCTTCCAGTTGCCCCAATTGTGA
CTGCCGTCGCGCATCCCAAACCACCGGCCATGGAGCGCTCCACGACCAGC
GAGCGCCGTTCGCGCCCAGTGCGTCCTGCCAGCAAAAAGGCGCAGCGTAG
AAATGGTCGTCCCATGGGTCAGATGGCCACCAAGGATTTGGGCCGCTGGA
AGCCCATTGACGACTTGGCCCTCATAATTTGGCATCCAGCAGACCAACGA
TCTGCGGATAATCCATCGCGGCGTTAAGTTTTCCTGCCAGTTTACTCTGC
AGGAACTACAGCAGCGCTGGGAATGCTCTGCTGTATGAGCCTGCGGTGTC
AGGATGCAGTGTCCGCATTAAGAACCTGCACCCCGAATCGTGGAGTCGGT
CAGCGCAAAGCTTTGTACGCGGTGCAGGAGGAGATCTGCTTGGCACCATT
AAGAGCTCGGAACACCAAAACTTGAGAATTCCAGGAGCTACTGGAAAAGA
ATGCCTCGTTCTACTGGCCCGCTGGCAAATCCTTGCAAACCAATGGCTTC
TCTCAAGCAATAACCCTTGTGGCGGATCAGTCAGGTGAGCTAAATTG
FMO06016.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:57:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcd5-RA | 1947 | CG1135-RA | 101..1241 | 9..1134 | 5020 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:57:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4040965..4041693 | 282..1006 | 3135 | 97.8 | Plus |
| 3L | 28110227 | 3L | 4040629..4040903 | 9..283 | 1375 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:57:22 has no hits.
FMO06016.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:57 Download gff for
FMO06016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcd5-RA | 96..1256 | 1..1147 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:56:16 Download gff for
FMO06016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1135-RA | 91..1251 | 1..1147 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:46 Download gff for
FMO06016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcd5-RA | 96..1256 | 1..1147 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:46 Download gff for
FMO06016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4040624..4040903 | 1..283 | 98 | -> | Plus |
| 3L | 4040967..4041693 | 284..1006 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:57 Download gff for
FMO06016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4040624..4040903 | 1..283 | 98 | -> | Plus |
| arm_3L | 4040967..4041693 | 284..1006 | 97 | -> | Plus |
