FMO06019.5prime Sequence
1166 bp (1016 high quality bases) assembled on 2008-09-15
> FMO06019.5prime
CAGTCGACATGACTCTCAACCTGGGCGGCTGGATCCACAGCTTCACAGTG
ACGGACACCCAGGAGCACAAGGGCGGGTACACAATATACAAAATCACCTC
GATTGTCTTCCCAAGGTCGGTACCTCAAGCTCTGACCTGCCTGGTGGTGT
GGAAACGGTTCCACGATGTCAAGCGGCTGCATCGCGAGCTTAGCCGGCGC
CACAAGAGTCTCCAACTACCCGGCAAGTTGCCAGTGCCCACAGATAGCAC
ATATTTCAAGAGATTCGATGCGGCAGTCATCCAACGGCGTAAGGAGTACA
TCCTGCAATTATTAGACTTTGCAGCGCAGCATCCGGCGCTGTACAAGTGC
TCAACCTTCACACAGTTCTTCCAGGAGACACCCTCGCCAAACGGATCGCC
ACTTAAGAAGCTATATGTGGAGCGATCCCTGCGGCTGCAGACGGAAGACA
ATGGCTGCGGAAGTGGCGGTTCGGAAACAGGAACTTGCGCTGGTGCCATA
GCCGACATTTGCGATAAACTAGACTTGCCCTATGACCCACACGACGCGGG
GGGCATCACGCCTCTAGATCCGCGCTGTGATAAGGAGCAAACGAACAACG
AATCCCAGGCCAAAGAAACTGAAATCGAATTAGAAACGAAACAGGAGCCC
AAGACAGACGTAGCGCTGACCAAGAGGGATTATCTCCGCCTTCTGACGCC
CATGGCTTCCATAGAAAGCGACGACAGCGACTACATATATGAGGCGGCTC
TAGAGTTCAGTCATGCCGTCCAAGCGGAGGTTAACCTGGAGTATGCCGAA
GCCCACGAGAGGTACAAGCATGGTGTGTACCTGCTGCTCAATGGGGCCAA
GCAGGATAGCAGTGAGGAGCGTAGATTTATAGCCAAGGCGAAGATAGCCA
AATACTTGGCGCGGGCTGAGGAGATCACGCCAATTTCCTGGCCCACGATT
GTCCGACGAAGAAGCTGCAGTTCCAGCTCTCGCTGGACACGACAGACGGC
GGTAGCGTGAGCATTGGAAGTGCCCTGGAATCAGTGGCACGCTACAAGGT
GCTGCGATCCTCAGGACGGTGTGGATGCAGGTGGCAGTGTGGGACGAATT
CCAGCAGCGGCTGCCATATGAAGGGCGTTAGAGCTGCAGTCACGCCTGAA
CCCAGAAAACCTTCGC
FMO06019.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:23:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7156-RA | 2619 | CG7156-RA | 102..1228 | 9..1128 | 5250 | 98.3 | Plus |
| CG7156-RB | 2542 | CG7156-RB | 382..1151 | 366..1128 | 3465 | 97.5 | Plus |
| CG7156-RB | 2542 | CG7156-RB | 102..381 | 9..288 | 1400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:23:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18240946..18241900 | 1055..105 | 4515 | 99.2 | Minus |
| 3R | 32079331 | 3R | 18241961..18242058 | 106..9 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:23:02 has no hits.
FMO06019.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:21:03 Download gff for
FMO06019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7156-RA | 123..1261 | 1..1137 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:56:21 Download gff for
FMO06019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7156-RA | 123..1261 | 1..1137 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:10:06 Download gff for
FMO06019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7156-RA | 98..1236 | 1..1137 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:10:06 Download gff for
FMO06019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18240862..18241900 | 105..1137 | 97 | <- | Minus |
| 3R | 18241963..18242062 | 1..104 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:21:03 Download gff for
FMO06019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14067685..14067784 | 1..104 | 96 | | Minus |
| arm_3R | 14066584..14067622 | 105..1137 | 97 | <- | Minus |
