FMO06020.5prime Sequence
1151 bp (1034 high quality bases) assembled on 2008-09-15
> FMO06020.5prime
CAGTCGACATGGTGCACGAAATCAACCCAAATTCGGATCAGGGTGAAGGC
GTAGTCAATTCGACCAGCTTGGAGGATGTTGCATTAAGCGAGATGAGCGA
CAACCGCGCCCAATCCATTCAGTCCCTACACAGCGTCTTGGAAACGCCCA
CGCCCGATACCACGCCCAGCTTCGATGAGTTGCAGCAGCGCTTGGAAGCC
TCCAATAGGAACATGCAGCACCTGCACGACGAACAGGCGAAGCTGTTACA
AATCCAAAATTTGGCCAAGACTCACCTTAACGAGATGGAGCGGCTGCGCC
AGCAAGCCGATAGCTTACCCCACAATGTCAATGGGGGAGAGGCCCCCAAA
TACGAGTCCGTGCAGCAGGTACAGGACGACATGGCGTCGCTGGTGGGGCG
CATGAAGAATCTCACCGCCTTTATACACAACCAGAACGAACTGAGCACGG
TGCTTGGCGATGATGGGCCCGAGATCCTGGCCGAGCAGGAAGCCCTGCAG
GAGAAACTGGAATCACTGCGCACCCAACGTGAGGATATGCGCAATCTGGT
GGACGAACTAAACAGCATCAACCGTGCGGCCAGGGAGACTGCTAGAGTCA
TCAAAGAGAAAGAGGAGACTCCCACGCCTCCTCCCAAGCCAGAGGAGGCT
GCCCCAGCGGCTCCCAAGGAGCGTGTTGTTCCTGTGGAGTATCAGAGAAA
CGTACCCATCATACGCCAGGAGGCGGCCAACGCTGCTCAACGGGCACTTC
ACGCACAGGCAATGATCAACCAGAAGACGGCAGATATAGAAGCACTCAAG
GCTCAGATGGCGAGACTAAAGGGAATGCTGTACACTGTTAGCCAGATTGA
AGAAAGTACTCCCAGCATGGGCTCCACCTTAGAGCGGCGTGTGAGGAAAG
AACTAGCGTGAGCGCGAATTGCCGGCCGAGATTGCCCAGCGCGTATTCGC
TCTGACGATGTTACGAGCGACTGAGAGCGGAGCAGCAAGCTTGCAAAGGA
GCGTGACCGTATTCCTAGGCCTGAAGCAGAGATGGACGACGCAAACAACA
GCGCGCCGCTGTCAATGGCCGATGATGCACCTTAAAGAAGCAGTCTTACC
AACCCCACCCATGAGAACGCGAGACCGAGAAAGATCATCGAGGTATCCTC
A
FMO06020.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10732-RD | 5200 | CG10732-RD | 958..2104 | 7..1134 | 5125 | 97.5 | Plus |
| CG10732-RC | 5206 | CG10732-RC | 958..2104 | 7..1134 | 5125 | 97.5 | Plus |
| CG10732-RB | 3249 | CG10732-RB | 744..1890 | 7..1134 | 5125 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13444366..13445387 | 91..1100 | 4400 | 97.8 | Plus |
| 3L | 28110227 | 3L | 13444220..13444305 | 7..92 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:02:49 has no hits.
FMO06020.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:52:00 Download gff for
FMO06020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10732-RB | 738..1870 | 1..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:56:23 Download gff for
FMO06020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10732-RB | 725..1857 | 1..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:39:28 Download gff for
FMO06020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10732-RB | 738..1870 | 1..1116 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:39:28 Download gff for
FMO06020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13444214..13444305 | 1..92 | 95 | -> | Plus |
| 3L | 13444368..13445408 | 93..1116 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:52:00 Download gff for
FMO06020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13437314..13437405 | 1..92 | 95 | -> | Plus |
| arm_3L | 13437468..13438508 | 93..1116 | 97 | | Plus |
