FMO06021.5prime Sequence
1071 bp (677 high quality bases) assembled on 2008-09-15
> FMO06021.5prime
CAGTCGACATGAGCGGACTCCTTCCGAAGTTGTGGCGCCAATGTGAAGCG
GGGCTAGTGCGCCGTATCAGCCAGGCACTGATTGGACCCGGCGCCAGTCA
GAGCCGGTGGACAGGGACCCGTCTCCTGGCCACCAGTGCGGATAAAAATC
CGGCCCCGGGGCTGCGGGAGCTGCCCCACTGCAATGTGGGCACCATTGGT
CACGTTGACCATGGTAAAACGACCCTGACCGCCGCCATTACCAGAATCCA
GTCACAGAAGGGTCTGGCGGAGTACCTGTCCTACGACCAGATTGATCGGG
CGCCCGAGGAGAAGGCGCGTGGCATAACTATAAATGCTTGCCATATTGGG
TATTCCACTACAGAACGCACCTACGCTCACACGGATTGCCCGGGTCATGC
GGACTACATAAAGAACATGATCTCGGGCGCCTCCCAAATGGATGGCGCCA
TTCTAGTGGTGGCTGCCACCGATGGTCAAATGCCCCAGACTCGCGAGCAC
CTTCTTCTGGCAAAACAAGTGGGCATCCAGCGCATCATATTGTTTATAAA
CAAGGCCGATTTGGTGGACCAGGAGGTGCTGGAACTGGTCGAGATCGAGA
TGCGTGAGATGCTAAGTGATTTCGGCTTTGATGGCGTGAATAGCCCGGTA
ATTTGTGGCTCAGCGCTGCTGGCCCTTCGCGAAATAAATCGGAGTTCGGG
GTTCCGTCAATTGAAAAGCTACTTGAGCAATGCGACTCTTACATACCAAC
GCCGCAACGCGATATCTCGTCCCCATTTAATCCTGCCAATAGACAATGCT
TTTACGGTACCCGGAAAGGGAACCGTGGTCGTGGGAACCATCAAAAGGGG
CACCATTCCCCGGAACGCGGATGCAGACCTATTGGCTTCATCAAACTGAG
ACAAGCTCACGACATCCAGAATATCCGGAAAACTGCTTCAGCCAGGCTGG
CAGAACTTCGCCCCCTGCTGCAAGTATTAGATATCCGCCATGAGCGGGAA
TGCTATTGTGCCAACCGGCTTCGAGGAATTATCCAACACCTTTGAAAGCT
CATGTATTCGGCATCTCGAGG
FMO06021.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12736-RA | 1711 | CG12736-RA | 247..1314 | 9..1057 | 4505 | 96.2 | Plus |
| EfTuM-RB | 1776 | CG6050-RB | 427..753 | 173..499 | 310 | 74.3 | Plus |
| EfTuM-RA | 1720 | CG6050-RA | 371..697 | 173..499 | 310 | 74.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7509169..7509642 | 885..412 | 2215 | 98.7 | Minus |
| 2R | 25286936 | 2R | 7509707..7510111 | 413..9 | 2025 | 100 | Minus |
| 2R | 25286936 | 2R | 13508181..13508309 | 371..499 | 300 | 82.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:57:13 has no hits.
FMO06021.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:20:14 Download gff for
FMO06021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12736-RA | 239..1141 | 1..899 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:56:27 Download gff for
FMO06021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12736-RA | 336..1238 | 1..899 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:44:07 Download gff for
FMO06021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12736-RA | 239..1141 | 1..899 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:44:07 Download gff for
FMO06021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7509173..7509640 | 414..881 | 98 | <- | Minus |
| 2R | 7509707..7510118 | 1..413 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:20:14 Download gff for
FMO06021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3396678..3397145 | 414..881 | 98 | <- | Minus |
| arm_2R | 3397212..3397623 | 1..413 | 99 | | Minus |
