FMO06024.5prime Sequence
1180 bp (1049 high quality bases) assembled on 2008-09-15
> FMO06024.5prime
CAGTCGACATGCACCACAAACAGCATCTGCATCTGCATCTGCAGCCCCCC
GCCCCAAACGCCACCCAAACACAGGCCCACGGACTTGGCCAGACTCCAAG
CCAGATCGCCAGATGCAGCCATAACCACAGCCCCAGTCTGGGCCTCAGCT
TTGGCGGCACCAAGAGCCAGCGACAGCTGTTTGGCGCACTCTTGGCCATG
TTCACGTTGGCGGCATTTGCGTCAACCACCAGTGGCGCTGTGACAGACTC
ACCCATCAAGATTATCCGGCTGCCGGCGCAGGCGCCAGTTATCCGCTATC
GCAGTGCAGATGCGGCGCCCAACTCATTGCTGATCAACTATCGTCAGGAT
GCGCGACCGGAGCTGTCGTCCACATTGATGCAGGCACCCGGAGCGGCGGC
AGCTGCCTTGGAGTCGCTGCTGCGCGAGGAGACGGAGCAACAGCAGCTGT
CACAGATGGGCAGACGGAATAGGGCTAGTAACACCGGCACCGGCAACTGT
CCTCGATCCTGTCCACCGAGCATCACCGTGGGAGCTGAGCCCGTGTGCGG
CAGCGATGGTCTGATCTATGCGAATATCTGCGAGCTGCGCAAGAAGACTT
GCTCCCGCAGTGGAGTGTCGCTGATCAAGGACGTGCGGGATGGCTGCGAG
AGGTCGAAGGGTTCGGACTGCAAGCACCGCTGCAGCACGGAGAAGGATCC
AGTGTGTGGTACAGACGGAAGGACCTATCTGAATCGCTGCATGCTGAGGG
TGCAATCGTGTCGCGTGGGATTGGCTGCAGTGAAGCTATCGCATGTGGGT
CCCTGCAGCAACACGAGTGCCGTGCGTGAGTCCTGTCCGGGTTGACTGCA
ACAGTGCGCCGAAAGGATGGACCAGTTTGCTCATCGGATGGCAATGTATA
CAACTCCACGTGCGAGATGAAGCTGAAGACGTGTGGACAGGGTGTGGTGA
AAACCAGCCGGAAGCACTGTCAGTCCACACGAATGTGCAGGGAATCCTGC
TGGCGTGGTGGCGAGTCCACTTGCGATCGATGGCAGACTGTATGCCAGTC
GTGCCAGATGGCCTCTTCAATGCGGCAAGCACGTCTTTGAGGTCCCTATA
TCCTACTTGCATGTTCGCAAGGAAAGGCACGGACCTTCGATGCCTGTTCA
CGGAAGTGTCCCAATCGGATCGATTCTCGG
FMO06024.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32354-RA | 3251 | CG32354-RA | 1140..2303 | 9..1170 | 5305 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8416984..8417860 | 1107..234 | 3870 | 97.6 | Minus |
| 3L | 28110227 | 3L | 8420840..8421066 | 235..9 | 1135 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:48:11 has no hits.
FMO06024.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:26 Download gff for
FMO06024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32354-RA | 1132..2311 | 1..1176 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:56:09 Download gff for
FMO06024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32354-RA | 207..1386 | 1..1176 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:29:41 Download gff for
FMO06024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32354-RA | 1132..2311 | 1..1176 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:29:41 Download gff for
FMO06024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8416914..8417859 | 235..1176 | 97 | <- | Minus |
| 3L | 8420841..8421074 | 1..234 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:26 Download gff for
FMO06024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8410014..8410959 | 235..1176 | 97 | <- | Minus |
| arm_3L | 8413941..8414174 | 1..234 | 98 | | Minus |
