FMO06025.5prime Sequence
1154 bp (1019 high quality bases) assembled on 2008-09-15
> FMO06025.5prime
CAGTCGACATGGAGCTGACTGGATGGGTGAAGAACTACGGCTGGGGCCGC
AAGGGCATCAACTCGGCGGTGGCCCAGCTGGCAATGGCCAATGATCCGGA
CTTTCGTCTGAACGAGGAGGAGACCTATGCGGAAATGTGGATGGGCACGC
ATGTGTGCGGTGTGTCCGTGGTCAAGGAAACCGGAGAGACTCTGGACCGA
GTGCTAAAGAAGGACCTTTCATACCTGTTCAAGGTGCTAAGCATCAACAA
GGCACTCAGCATCCAGGTGCATCCGAACAAGTGCGAAGCGGAGCGCCTGC
ACAAGGAGCGCCCGGATATCTACAAGGATCCCAATCACAAGCCGGAACTG
GCCATTGCCCTCACGCCCTTTCTGGCCCTCGTGGGATTTATGTCAGCCGA
AGATATCAGGGACTACATCGATGAGTTCCAGCCGCTGAGTAAACTCATTG
GCAAGGAGGCTGTGGATCAGCTCCATGACTCGACCAACTCGGAAAGCGTT
AAGTTGTGCTACGAGAAGCTGATGAAGACCGAAGAGCCGGTGATAGCCAA
GTGCATCAGTGAAATAGCCAAGGATTACCAAAACGAACTGAAATCCAACG
ATCTGCTTGAGGTGTTCACCAAGGTCAACAAAGACTTCCCCGGCGATGTG
GGCGTACTGTCCCTGTTCTTCCTCAACCTAATCCGCCTGCAGCCCGGCCA
GGCGATCTACTTGGGCGCGAACGAGATTCATGCCTACCTGGACGGCGACT
GTGTGGAGTGCATGGCTTGCTCGGACATGTGATACGGGCGGGCCTAACGC
CCAAGTACAAGGATGTGGACCAGCTGCTGGAATCTGTGATCTTCGAAAGT
CGTATAAGGATCGCAGGAGTTCATTCCGTACCGATAAGATGACCAGGTCC
AGGTCTATATTCGCCAGTATCCGACTTTGCAGTGATAAATGTGATATCGA
ACACTCGCTGGGAGTCGTACAAGCTGGAAAAACAGGCATTCGGCTCCATA
TTGATAGTCTAAAGGGATCCCGCATTCTTAATTGAACCCAGCAGGGAGAA
TATGGAGAATCTTGGTAACCGGCGCAGCATTGTGTACATCGTCAAGGCGG
CCCGGAAATCGATCGCAGTCCGACGATTGCACGAAGAAACTTCCCGCTCA
ATGC
FMO06025.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:25:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8417-RA | 1410 | CG8417-RA | 157..1293 | 9..1130 | 5090 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:25:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9759902..9760478 | 9..585 | 2885 | 100 | Plus |
| 3R | 32079331 | 3R | 9760531..9761042 | 585..1089 | 1845 | 95.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:25:31 has no hits.
FMO06025.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:32:08 Download gff for
FMO06025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8417-RA | 150..1305 | 1..1143 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:56:38 Download gff for
FMO06025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8417-RA | 175..1330 | 1..1143 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:22:18 Download gff for
FMO06025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8417-RA | 150..1305 | 1..1143 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:22:18 Download gff for
FMO06025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9759895..9760478 | 1..585 | 99 | -> | Plus |
| 3R | 9760532..9761103 | 586..1143 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:32:08 Download gff for
FMO06025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5585617..5586200 | 1..585 | 99 | -> | Plus |
| arm_3R | 5586254..5586825 | 586..1143 | 94 | | Plus |
