Clone FMO06027 Report

Search the DGRC for FMO06027

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:60
Well:27
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG32392-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO06027.5prime Sequence

360 bp (-75 high quality bases) assembled on 2008-09-15

> FMO06027.5prime
CAGTCGACATGCCAGAGACGGAGCAGCCGCAGCACCCAGCACACTCACAT
CCTGAACTTAAGCCAGATCCACAGCCAGTGCCAGAACTGGAGCACCTCAC
CGACAATAGACCGAATCGCGTGCAGAACTTCTCCTTCGCCAGCAGCTATC
CCTACGCACCAGGACGCGTCTCGTCCAGCTCCAATTCGAACACCAACTAC
AGCTCCACCAACTACAACGCCGGCGGCTTCAACGTCCAGCGCTATCAGAG
TCCCTACAATTTCCAGCACGTGGTGACCAACGCATTCTCGGTGCTGCGCC
ATCAGCCCTCCGAGGAGCCCGAATTCGATTCCTATCCAACGCGACCCCTA
CAGGCCATCG

FMO06027.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG32392-RB 2507 CG32392-RB 224..576 8..360 1735 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6760539..6760891 360..8 1735 99.4 Minus
Blast to na_te.dros performed on 2014-11-28 19:35:08 has no hits.

FMO06027.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:43 Download gff for FMO06027.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32392-RB 217..576 1..360 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:56:45 Download gff for FMO06027.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32392-RB 205..564 1..360 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:32 Download gff for FMO06027.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32392-RB 217..576 1..360 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:32 Download gff for FMO06027.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6760539..6760895 1..360 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:43 Download gff for FMO06027.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6753639..6753995 1..360 98   Minus