FMO06029.5prime Sequence
1033 bp (793 high quality bases) assembled on 2008-09-15
> FMO06029.5prime
CAACAAGATCAACCAGGTGCCACAGGATCAAGGGGAATCTCCAGACGCAA
TTGCGTCTTCACTCAAAAGTAATGGCTCAAAAGCGGCAAATGGTGTAAAA
AGTAAACCTCCGGTGGAAAAGCCCTTACTTACAAGTGGAAATTCTCTGCT
TGAATCATTATCAAAAATTGGTCAAGTGGAAAATCCGCAAGAGAACGATA
CAATCCGGCTGATACAGCAACTGTTACGTAGGAAATTATTGGCCAAAAAT
AGTGCTGTGCCATCCAGCGAAAATAAGCCATCAACTGATCCGGTCAAAAT
AGTTACCCAACCAAAGGAAATCAAAAGTGAAGAAAAGAAACCAAAGATTT
CGAGTACCTCGGTTACTCCAAAACTCAAAACAGAAGCCAAGGCATCTGGA
ATTTCAAAAGAAGAGGAAATAAATGATCTACTCAAATGCTTGGGCAGCAA
ACTGCCAAAGGGATCTGGTGAATCCCCAGCAGCCGCGTTATTCAGCAATC
TTGGAAAGCTTTTCAGCCAAGCGCCGCCCAGCGATGTCGAGTCATCCGAT
GAGGAAGTGGAGGAGTATGTGGAGTACATCTATAAGCCAAGGCAATATTT
TATGGCCTCACTGTGCAATTTTCTGCAAGTCGGATCTGTGCGGCAGAATC
GGATACCCTGCTCCCGCTGTGGACTGACCTACTACTGCAGCAGTGGGCAC
ATGAAAGACGACCAGGAGCACCGCCAGCTGTGCTACGCCCTGCGCCAGAC
GGTGGACCGCAATGGTCACGAGATGTTCTACAAGTGCGCGACTACAGTGA
CGAACAGTTCGGTCCTTTCGGATCGTGTTGCATCCCCCAGGTGAGAGGAG
ATGATTCGTCTGCTCAGCGCAACGGAAAAGAAGTTGCTCCTAATTCCCTG
TTCTTGCCCCGACTCAAGTGCGGGAGCCTCCCTTTAACGTCTATCCATGT
GCGGTGATGTGGCAGGTGCTTCCTGCAGGATAGCCCGAGACCCGAGCAGG
ACCATCCATGTGTGAGCTATTAAATTCAGGCCT
FMO06029.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:23:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13458-RA | 2188 | CG13458-RA | 267..1273 | 1..996 | 4295 | 96.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:23:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15113823..15114284 | 1..462 | 2295 | 99.8 | Plus |
| 3L | 28110227 | 3L | 15114343..15114501 | 461..619 | 795 | 100 | Plus |
| 3L | 28110227 | 3L | 15114823..15114969 | 621..766 | 670 | 98.6 | Plus |
| 3L | 28110227 | 3L | 15115038..15115236 | 764..956 | 275 | 84 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:23:08 has no hits.
FMO06029.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:21:09 Download gff for
FMO06029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13458-RA | 267..1145 | 1..876 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:56:46 Download gff for
FMO06029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13458-RA | 267..1145 | 1..876 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:10:10 Download gff for
FMO06029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13458-RA | 267..1145 | 1..876 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:10:10 Download gff for
FMO06029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15113823..15114283 | 1..461 | 99 | -> | Plus |
| 3L | 15114344..15114501 | 462..620 | 99 | -> | Plus |
| 3L | 15114823..15114967 | 621..764 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:21:09 Download gff for
FMO06029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15106923..15107383 | 1..461 | 99 | -> | Plus |
| arm_3L | 15107444..15107601 | 462..620 | 99 | -> | Plus |
| arm_3L | 15107923..15108067 | 621..764 | 98 | -> | Plus |
