FMO06030.5prime Sequence
1175 bp (1000 high quality bases) assembled on 2008-09-15
> FMO06030.5prime
CCTATACGAAGTTATCAGTCGACATGCTGCGTGCCATGATGGCCTACATC
TGGCCAAAGGAGGATCCACTGGTGCGAAAGCGGGTGGGTATTTCCCTGGG
TCTGTTGGCTGGCTCCAAGCTGCTGACCGTCTGTGTCCCCTTCTTGTTCA
AAGGAGCTGTGGACACGATGACAACGCTGAACATGGACACTGCCCCGGAT
GCGGTCCTCTCCGCAGCCACCGCACTGATGTTGGGATATGGCATTGCTAG
AGCCAGTGCGGCGGGCTTTAATGAGTTGCGGAATGCAGTGTTTGCCAAGG
TGGCCCACCACTCGATCCGAAAGATCGCCAGCAATGTGTTCCTGCATCTG
CACAACCTGGATCTGGCCTTCCACCTGAACAAACAAACTGGAGCACTGTC
AAAGACCATCGATCGAGGATCGAGGGGCATTAACTTTGTGCTCTCCGCCA
TGGTCTTCAACATTGTGCCCACTATCTTTGAGCTGGCCCTCGTGTCCAGT
ATCCTGGGAGTGAAGTGTGGCCTGGCCTTCGCTGGTGTCAGCATGGGCTG
CGTTGGCATATACGCTGCCTACACTCTGAGTGTGACCCAGTGGCGCACCC
AGTTCCGTGTATTTATGAACCAGGCGGAGAACGAGGCCGGCAACAAGGCC
GTAGACTCGCTGATCAACTACGAGACGGTGAAGTACTTCAACAACGAAAA
GTACGAGGCGGGTTGCTACAACGAGGTGCTGAAGAAGTATGAGGCGGCCA
GCTTGAAGACTAGCTCCAGTCTCGCTCTGCTCAACTTTGGCCAGAACGCC
ATTTTCAGCACCGCACTGAGTCTGATTATGGTATTGGCCGCCCAAGGAGA
TTGCCCAAGGCACCATGACGGTTGGAGATTGGTAATGGTCAACGCCCTGC
TCTTCCAGCTCCTCGATCCCCCTTCGGTTTTCTGGGCAGTGTTTTATCGT
GAGGTGCGACAGGCTTTGCTGGACATGCGGGCCATGTTCACGTTGATGAA
CGGGGAACAGTAGCATTCAGACAGCCGCAATGCCCAGCCCTGTCCGGGAA
CCCACTAACCTCATCATTGAGTTCGCACCTGAGCCTCCAGTACGAACCTG
CAGCCTATTTCCGGGACCTCAGATTCACCATACCCGCCGATAAAACGTCC
ATTGGGGGCGCTCTGAGCTAGGGAA
FMO06030.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ABCB7-RB | 2387 | CG7955-RB | 397..1546 | 24..1165 | 5080 | 97.1 | Plus |
| ABCB7-RA | 2743 | CG7955-RA | 499..1648 | 24..1165 | 5080 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1621317..1622228 | 238..1145 | 3640 | 96.2 | Plus |
| 3L | 28110227 | 3L | 1621102..1621257 | 82..237 | 780 | 100 | Plus |
| 3L | 28110227 | 3L | 1620984..1621043 | 24..83 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:04:45 has no hits.
FMO06030.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:53:33 Download gff for
FMO06030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ABCB7-RA | 494..1642 | 17..1160 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:56:49 Download gff for
FMO06030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7955-RC | 778..1926 | 17..1160 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:40:51 Download gff for
FMO06030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ABCB7-RA | 494..1642 | 17..1160 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:40:51 Download gff for
FMO06030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1620979..1621042 | 17..82 | 95 | -> | Plus |
| 3L | 1621103..1621257 | 83..237 | 100 | -> | Plus |
| 3L | 1621317..1622246 | 238..1160 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:53:33 Download gff for
FMO06030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1620979..1621042 | 17..82 | 95 | -> | Plus |
| arm_3L | 1621103..1621257 | 83..237 | 100 | -> | Plus |
| arm_3L | 1621317..1622246 | 238..1160 | 96 | | Plus |
