FMO06032.5prime Sequence
1157 bp (1046 high quality bases) assembled on 2008-09-15
> FMO06032.5prime
CAGTCGACATGTCCAAGGGATCGGTGTTGCCACAATATATTGCTGGCTTG
TCGGCCAGCTTTGGTGCCCTCTGCATGGGCGCCTCCATTGGTTGGTCCTC
GCCCGTGGAGAATATGATAACGGTGAACACGGAATACGGCTTTCCCATTA
GCTCCAGTCAGTTCGGCTGGGTATCCTCGCTGCTGACCCTGGGCGCCACT
GTGATCTGCATTCCCATTGGTTTCGCCATCGATTGGATCGGCAGGAGACC
CACTATGTTAGCCCTAATTCCACCGTACATGGTGGGCTGGGTGCTGATGC
TGTTCGCCAAAAACGTGACCATGCTCTACTTCGGACGATTCATTCTTGGC
ATGTGCGGCGGAGCCTTTTGCGTAACAGCTCCCATGTACTGTACAGAGAT
TACGGCGACAGCACTACGAGGCACCATCGGATCCTTTTTCCAGCTGCTGA
TTGTGTCGGGCGTGCTGTACGGCTATTTGGTGGGCGCCTTCCTGCCCCTG
CTCACCATCAATATCCTGTGCGCTATTCTGCCCGTAATCTTTGCTATCAT
ACACTTCTTCATGCCGGAGTCACCCGTCTACCTGGCCATGAAGGGACGCA
ACGATGATGCCGCCAAGGCCTTGCAGTGGCTGCGCGGCAAGGATGCCGAT
ATCGATGACGAGCTCAAGGAGATCCTGGAGGAGTCCCAGAAGCAGATTGA
TATGCCACAGGTCAACATTCTGTCCTCCCTTCGTCGACCCATCGTCCTGA
AAGGGTCTTGGAATCGCTGTGCTCCTGCAGGTCTTCCAGCAGTGGACGGG
AATCAACGCCGTTCTCTTCTACTCCGCCTCCATTTTCGAGGATACGGGCT
CTGACATAAGTGGCAGCGATGCCACGCTTATCATTGGAGTCAACCAAGTG
ACCAGCACGCTGGTTGCCGTGCCATTATCGACAGGCTGGCCGTCGCATCC
TGCTCCTTATCTCTGGCGTTCTGATGGCGTGTCCACTGCACTGATGGGCG
TGTACTTTCAGCTAAAGAGAACGATCCGCTTCAATGGACAATTTCGGTGT
TGCCGATCAGCAAGTATCTTGCATTTCATATCTTCCTTCTCGATGATCGA
ACGTGCCGTGCCTGGTGATGGCGAAACTCTTCTTGGAGAAGTGTAAAAGT
GGCAGAT
FMO06032.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:23:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6484-RA | 1590 | CG6484-RA | 65..1209 | 4..1138 | 5235 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:23:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17583240..17583948 | 712..4 | 3530 | 99.9 | Minus |
| 2R | 25286936 | 2R | 17582468..17582828 | 1062..708 | 1430 | 97.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:23:14 has no hits.
FMO06032.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:21:13 Download gff for
FMO06032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6484-RA | 62..1222 | 1..1151 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:56:51 Download gff for
FMO06032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6484-RA | 59..1219 | 1..1151 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:10:14 Download gff for
FMO06032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6484-RA | 62..1222 | 1..1151 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:10:14 Download gff for
FMO06032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17582375..17582825 | 711..1151 | 94 | <- | Minus |
| 2R | 17583242..17583949 | 1..710 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:21:13 Download gff for
FMO06032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13469880..13470330 | 711..1151 | 94 | <- | Minus |
| arm_2R | 13470747..13471454 | 1..710 | 99 | | Minus |
