FMO06033.5prime Sequence
1137 bp (1033 high quality bases) assembled on 2008-09-15
> FMO06033.5prime
CAGTCGACATGGGCTACGACGACGTCATCACCCACCTGGGTGAATTCGGT
CCGTATCAGAAGCGCATCTACTACCTTCTCTGCCTGCCGGCTATAGTCTG
CGCCTTCCACAAGCTGGCCGGAGTGTTCCTGCTGGCCAAACCCGACTTCC
GATGTGCCCTGCCATACGAAAATGGCAGTATCTATGAACTATCACCCCAC
CTGTGGAACCTATCGTATCCGGAGAATGAAAGGTGCTCCTACTACGATGT
GGATTACACGGAGGAGTACCTGAATGGCAGCATTCCACGGAGCAGCAACG
AAACCAAGACCTGTTCCAGCTACGTTTACGATCGGAGCAAGTATCTCAAT
AGTGCGGTGACCGAGTGGAACCTGGTCTGCAGTCGAAGCCTGCTAAGTGC
CACCAGTGATTCGTTATTCATGCTGGGCGTGCTCCTGGGCAGCTTAATCT
TTGGCCAGATGTCCGACAAGCTGGGACGCAAGCCCACCTTCTTCGCCTCA
CTGGTGCTTCAGCTAATCTTCGGCGTTTTGGCTGCCGTGGCACCCGAATA
CTTTAGCTACACGATTTCCCGTATGATTGTGGGCGCCACCACTTCGGGAG
TCTTCCTGGTTGCCTATGTCATCGCCCTGGAGATGGTGGGCTCCTCGTAT
CGCCTCTTTGCCGGCGTGGCCATGCAGATGTTCTTCTCCGTGGGCTTTAT
GCTCACGGCCGGCTTTGCCTACTTCATCCACGACTGGCGTTGGCTGCAGA
TTGCTATAACCTTGCCGGGACTGCTCTTCCTTTGCTACTACTGGATCATT
CCGGAGTCTGCCCGTTGGCTCTTGATGAAGGGTCGCAAGGATGAGGCCTT
TGTGATCATCGAGAAGGCGGCCAAGGAGAACAAGTGGCAGGTGCCCAATG
AAATCTACGAGCAGCTGGTGGACGAGTTGCCGAAAGAAGAGCAGGACGAG
ATGGCCGCCTCCAACCAGCGCCACTGTGTTCGATCTCCTGCGCTATTCGA
TCTCGACGGAAAACCCTGCTCATCTTCTTCGATTGATTTGTGACAGTGGC
GTTTACTACGCCTGTTCGTGAACACCAACGATCTGGTGAACAATGGTTAA
CTTATGATCTCTGTGCGGGAAATCCCAGGCTATCACG
FMO06033.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Orct-RB | 2154 | CG6331-RB | 307..1449 | 9..1133 | 5095 | 97.6 | Plus |
| Orct-RA | 2533 | CG6331-RA | 686..1828 | 9..1133 | 5095 | 97.6 | Plus |
| Orct2-RB | 2700 | CG13610-RB | 401..1264 | 8..871 | 1740 | 80.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24276945..24278031 | 9..1086 | 4830 | 97.8 | Plus |
| 3R | 32079331 | 3R | 24273429..24274292 | 8..871 | 1740 | 80.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:57:19 has no hits.
FMO06033.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:20:18 Download gff for
FMO06033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orct-RA | 681..1828 | 1..1133 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:22:38 Download gff for
FMO06033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orct-RA | 681..1828 | 1..1133 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:44:09 Download gff for
FMO06033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orct-RA | 681..1828 | 1..1133 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:44:09 Download gff for
FMO06033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24276940..24278050 | 1..1101 | 97 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:20:18 Download gff for
FMO06033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20102662..20103772 | 1..1101 | 97 | <- | Plus |
