FMO06037.5prime Sequence
958 bp (819 high quality bases) assembled on 2008-09-09
> FMO06037.5prime
GTCACCGGAGGAGCCGGCTACATTGGCTCCCACACGGTTCTGGAGATGCT
CAATGCGGGCTACAACGTCATCTGCGTGGACAACCTGTGCAACGCCTACA
GCAGCGGGGCCAAACTGCCGGAGGCCCTCAGCCGGGTGCAGGAAATCACC
GGCAAGAAGGTCAACTTCTATAGAGTGGACATCACGGACAGGGAGCAGGT
GCGCTCCGTCTTCCAGGAGCACAAAATCGACATGGTGGCCCACTTTGCCG
CCCTGAAGGCCGTGGGTGAGTCCTGCCGCATACCTTTGCAGTACTACCAC
AACAACATGACCGGCACCAATGTCCTGCTGGAGGCGATGGCCGACAACAA
TGTCTTCAAGTTCGTGTACAGCTCCAGCGCCACCGTATACGGTGAGCCAA
AGTTCCTGCCCGTGACCGAGGAGCATCCCACGGGCAACTGTACATCGCCC
TACGGCAAGACTAAATATTTCACCGAGGAGATTCTCAAGGATCTGTGCAA
GTCTGACAAGCGTTGGGCAGTGGTTTCGCTGCGGTACTTCAACCCGGTGG
GTGCCCACATCAGTGGTCGGATTGGCGAGGATCCGAACGGCGAGCCCAAC
AACCTGATGCCCTACATCGCACAGGTGGCCGTGGGTCGACGTCCCAGCCT
GAGTGTCTACGGCAGCGACTTTCCCACGCACGACTGCACCGGCGTGCGCG
ATTACATCCACATCGTGGACCTGCCGAGGGACACGTAAAGGCGTTGGACA
GCTGCGCAACATCGCGAGACGGCTTTTTCGCTACAATTGGGCACCGGCGT
GGCTACTCGGTGCCTGACTGGTGATGGCGTTTGAAACGCCTCCGCAGAGT
CACTACCTCTGATGACGACGGTCCGGAAAGTGGCCCTTGCTATGCGACGC
CACTTGCGATAAAGACCTGGGCTGGAAAGCCTGACGTGCATCTACAAAAT
GGTCAGGA
FMO06037.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gale-RB | 1538 | CG12030-RB | 301..1275 | 1..951 | 4045 | 96 | Plus |
| Gale-RA | 1757 | CG12030-RA | 520..1494 | 1..951 | 4045 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 650231..650523 | 218..510 | 1465 | 100 | Plus |
| 3L | 28110227 | 3L | 650582..650915 | 509..834 | 1210 | 96.4 | Plus |
| 3L | 28110227 | 3L | 649201..649419 | 1..219 | 1095 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:39:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dyak\HeT-A | 5691 | Dyak\HeT-A YAKHETA 5691bp | 5077..5115 | 386..348 | 123 | 79.5 | Minus |
FMO06037.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:18 Download gff for
FMO06037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gale-RA | 520..1327 | 1..802 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-09 11:02:24 Download gff for
FMO06037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12030-RA | 558..1365 | 1..802 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:20 Download gff for
FMO06037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gale-RA | 520..1327 | 1..802 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:20 Download gff for
FMO06037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 649201..649419 | 1..219 | 100 | -> | Plus |
| 3L | 650233..650523 | 220..510 | 100 | -> | Plus |
| 3L | 650584..650881 | 511..802 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:18 Download gff for
FMO06037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 649201..649419 | 1..219 | 100 | -> | Plus |
| arm_3L | 650233..650523 | 220..510 | 100 | -> | Plus |
| arm_3L | 650584..650881 | 511..802 | 97 | == | Plus |
