Clone FMO06038 Report

Search the DGRC for FMO06038

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:60
Well:38
Vector:pMK33-CFH-BD
Associated Gene/Transcriptmdy-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO06038.5prime Sequence

1150 bp (1046 high quality bases) assembled on 2008-09-15

> FMO06038.5prime
CAGTCGACATGACCACCAATAAGGATCCCCAAGATAAGGAGCCCGGGAAA
GCAGAACAACCGACCAAGAATAGCGGATCCAGCGGTGTGGGTATCATGAA
GCGCTTGAGAAGATCGGCGTCCGCCACAGAGCATAATCTTAGCAGTCTGC
GAAACCGCAAGTCAACACAAAATCTATTCGATCAGCACGGGAATCCCATA
GATCTGCGACAGTATCGTAAAGTTTTGGATAAGGATGAAAATGGTAATGG
AACCAACGGATCCGAGAAGAAGCTTAGATACAGGAGAACACAAAGTGTGA
CTCGTGCTGAGGAGATTTCCAATAAAGAGGAGAAGCAGAGAAGAGCTCAG
CCTGGCAGACCAATCCATCGGCCAAGAGATTCTCTGTTTTCTTGGAGCTC
TGGATTTACCAATTTTTCTGGACTGGTGAACTGGGGATTTCTACTGCTCT
GCATTGGAGGTCTGCGTTTGGGCTTGGAGAATCTCCTAAAGTATGGCATT
CGCATCAATCCACTGGATTGGTTCTTCTTCATAAGCGGACACAACGAAGG
CGAAGGACATAACGCCCTAATCCTGAGCATTTACTCTTTAGTGCATATCT
CGCTCTGTTTGGCTGTGGAGAAGGGTCTAGCCATGGAAATAATTGCAGAG
GGCTTGGGCTTGTTCATCCAGATAGTGAACATTGTTGTCTTGGTTTGCCT
ACCGGTGGTAACAATTCACCTAAAAGGACATGCTTTTAGTTTGATGGGCG
CTTCAACAGTTTGCTTCTTTTACTCTGTGTTGTTCCTAAAACTATGGTCC
TATGTGCAGACGAATATGTGGTGCCGTCAGACTTATTATCAAAAGAATCC
GCGGGAGCGTCGACCAAGCATAACTTTGGCGGAACTAAAAAGGAGTTTTG
AATGGAGGTGAAGAAGACGAGGACGTTTCCAAGCTGGTGCAATATCCTGA
TATCTCACATACAGATCTCTGTACTTCCTTTGCGCGCCACTCTCTGCTAT
GAGTGAATTTCCCGCGACTTCCCCGCGTGCCCAACGCTTTTTGCTGAGCG
TATGAGTGTGATTGAAGTGATGTGGTATGCTTGTTCACATGATCATTCAT
CGTCGACTCTGATCGTCTCAATTGGACTGCTTAGCATGAGAATCTTTAAC

FMO06038.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
mdy-RE 2309 CG31991-RE 363..1411 8..1047 4965 98.8 Plus
mdy-RC 2337 CG31991-RC 391..1439 8..1047 4965 98.8 Plus
mdy-RB 2017 CG31991-RB 71..1119 8..1047 4965 98.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:23:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16820122..16820475 8..361 1770 100 Plus
2L 23513712 2L 16825579..16825722 745..888 720 100 Plus
2L 23513712 2L 16820531..16820662 362..493 660 100 Plus
2L 23513712 2L 16825409..16825518 635..744 550 100 Plus
2L 23513712 2L 16820718..16820809 491..582 460 100 Plus
2L 23513712 2L 16825779..16825946 887..1047 450 92.9 Plus
2L 23513712 2L 16820878..16820931 583..636 270 100 Plus
Blast to na_te.dros performed on 2014-11-28 23:23:26 has no hits.

FMO06038.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:21:23 Download gff for FMO06038.5prime
Subject Subject Range Query Range Percent Splice Strand
mdy-RA 138..1205 1..1061 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:57:05 Download gff for FMO06038.5prime
Subject Subject Range Query Range Percent Splice Strand
mdy-RB 60..1127 1..1061 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:10:22 Download gff for FMO06038.5prime
Subject Subject Range Query Range Percent Splice Strand
mdy-RB 65..1132 1..1061 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:10:22 Download gff for FMO06038.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16820116..16820475 1..361 99 -> Plus
2L 16820531..16820659 362..490 100 -> Plus
2L 16820718..16820809 491..582 100 -> Plus
2L 16820878..16820930 583..635 100 -> Plus
2L 16825410..16825518 636..744 100 -> Plus
2L 16825579..16825722 745..888 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:21:23 Download gff for FMO06038.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16820116..16820475 1..361 99 -> Plus
arm_2L 16820531..16820659 362..490 100 -> Plus
arm_2L 16820718..16820809 491..582 100 -> Plus
arm_2L 16820878..16820930 583..635 100 -> Plus
arm_2L 16825410..16825518 636..744 100 -> Plus
arm_2L 16825579..16825722 745..888 100 -> Plus