FMO06038.5prime Sequence
1150 bp (1046 high quality bases) assembled on 2008-09-15
> FMO06038.5prime
CAGTCGACATGACCACCAATAAGGATCCCCAAGATAAGGAGCCCGGGAAA
GCAGAACAACCGACCAAGAATAGCGGATCCAGCGGTGTGGGTATCATGAA
GCGCTTGAGAAGATCGGCGTCCGCCACAGAGCATAATCTTAGCAGTCTGC
GAAACCGCAAGTCAACACAAAATCTATTCGATCAGCACGGGAATCCCATA
GATCTGCGACAGTATCGTAAAGTTTTGGATAAGGATGAAAATGGTAATGG
AACCAACGGATCCGAGAAGAAGCTTAGATACAGGAGAACACAAAGTGTGA
CTCGTGCTGAGGAGATTTCCAATAAAGAGGAGAAGCAGAGAAGAGCTCAG
CCTGGCAGACCAATCCATCGGCCAAGAGATTCTCTGTTTTCTTGGAGCTC
TGGATTTACCAATTTTTCTGGACTGGTGAACTGGGGATTTCTACTGCTCT
GCATTGGAGGTCTGCGTTTGGGCTTGGAGAATCTCCTAAAGTATGGCATT
CGCATCAATCCACTGGATTGGTTCTTCTTCATAAGCGGACACAACGAAGG
CGAAGGACATAACGCCCTAATCCTGAGCATTTACTCTTTAGTGCATATCT
CGCTCTGTTTGGCTGTGGAGAAGGGTCTAGCCATGGAAATAATTGCAGAG
GGCTTGGGCTTGTTCATCCAGATAGTGAACATTGTTGTCTTGGTTTGCCT
ACCGGTGGTAACAATTCACCTAAAAGGACATGCTTTTAGTTTGATGGGCG
CTTCAACAGTTTGCTTCTTTTACTCTGTGTTGTTCCTAAAACTATGGTCC
TATGTGCAGACGAATATGTGGTGCCGTCAGACTTATTATCAAAAGAATCC
GCGGGAGCGTCGACCAAGCATAACTTTGGCGGAACTAAAAAGGAGTTTTG
AATGGAGGTGAAGAAGACGAGGACGTTTCCAAGCTGGTGCAATATCCTGA
TATCTCACATACAGATCTCTGTACTTCCTTTGCGCGCCACTCTCTGCTAT
GAGTGAATTTCCCGCGACTTCCCCGCGTGCCCAACGCTTTTTGCTGAGCG
TATGAGTGTGATTGAAGTGATGTGGTATGCTTGTTCACATGATCATTCAT
CGTCGACTCTGATCGTCTCAATTGGACTGCTTAGCATGAGAATCTTTAAC
FMO06038.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:23:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdy-RE | 2309 | CG31991-RE | 363..1411 | 8..1047 | 4965 | 98.8 | Plus |
mdy-RC | 2337 | CG31991-RC | 391..1439 | 8..1047 | 4965 | 98.8 | Plus |
mdy-RB | 2017 | CG31991-RB | 71..1119 | 8..1047 | 4965 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:23:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16820122..16820475 | 8..361 | 1770 | 100 | Plus |
2L | 23513712 | 2L | 16825579..16825722 | 745..888 | 720 | 100 | Plus |
2L | 23513712 | 2L | 16820531..16820662 | 362..493 | 660 | 100 | Plus |
2L | 23513712 | 2L | 16825409..16825518 | 635..744 | 550 | 100 | Plus |
2L | 23513712 | 2L | 16820718..16820809 | 491..582 | 460 | 100 | Plus |
2L | 23513712 | 2L | 16825779..16825946 | 887..1047 | 450 | 92.9 | Plus |
2L | 23513712 | 2L | 16820878..16820931 | 583..636 | 270 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:23:26 has no hits.
FMO06038.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:21:23 Download gff for
FMO06038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mdy-RA | 138..1205 | 1..1061 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:57:05 Download gff for
FMO06038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mdy-RB | 60..1127 | 1..1061 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:10:22 Download gff for
FMO06038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mdy-RB | 65..1132 | 1..1061 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:10:22 Download gff for
FMO06038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16820116..16820475 | 1..361 | 99 | -> | Plus |
2L | 16820531..16820659 | 362..490 | 100 | -> | Plus |
2L | 16820718..16820809 | 491..582 | 100 | -> | Plus |
2L | 16820878..16820930 | 583..635 | 100 | -> | Plus |
2L | 16825410..16825518 | 636..744 | 100 | -> | Plus |
2L | 16825579..16825722 | 745..888 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:21:23 Download gff for
FMO06038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16820116..16820475 | 1..361 | 99 | -> | Plus |
arm_2L | 16820531..16820659 | 362..490 | 100 | -> | Plus |
arm_2L | 16820718..16820809 | 491..582 | 100 | -> | Plus |
arm_2L | 16820878..16820930 | 583..635 | 100 | -> | Plus |
arm_2L | 16825410..16825518 | 636..744 | 100 | -> | Plus |
arm_2L | 16825579..16825722 | 745..888 | 100 | -> | Plus |