FMO06040.5prime Sequence
1183 bp (1007 high quality bases) assembled on 2008-09-15
> FMO06040.5prime
CCTATACGAAGTTATCAGTCGACATGGAGATCCGAGTGGGAGTGGGCGAT
CTGCTGAAAATGGGCACCAAGCTCATTGGCCACAAGATCGTCCAGTATCG
CCTTGGCACAAAGCAGACGAAGGTGGTCTGCACCAGGGATGGCCAGGTGC
GCGGACATCGCCGAAGGACACTCTACGACGAGGAGATGTACTTCGCCTTC
GAGGGAATCCCCTTTGCACAGCCGCCGGTGGGGGAGCTGCGCTTCCGAGC
CCCCCAGCCACCACATCCCTGGTTGGGGGTGCGGGATTGCACCTATCCGC
GGGCCAAGCCGATGCAAAAGCACTTCGTGCTCAGCATCGTCGAAGGCAGC
GAGGATTGCCTGTACCTGAACGTATATTCCAAGCGCCTGAGATCGGACAA
GCCGCTGCCCGTGATCGTGTGGATCTATGGCGGTGGATTCCAGTTCGGCG
AGGCTGGTCGAGATTTCTACAGTCCAGACTACTTTATGCAGCAAGACGTA
GTGGTTGTCACATTCAATTATAGGGTGGGCGCATTGGGCTTCCTCAGCCT
CGCGGATCGCGACTTGGATGTGCCCGGAAATGCTGGTCTCAAGGACCAAG
TGATGGCCCTTCGCTGGATCAGTCAGAACATAGCCCAATTCAATGGAGAT
CCCCAAAATATAAACCGTGATGGGCGAGAGTGCGGGAGCAGCCTCCGTTC
ACGCGTTGATGACCACCGAGCAAACCCGAGGGCTGTTCCACAAGGCCATC
ATGCAATCGGGATCCATGTTCTGCGAGTGGGCCAATGAGCCAAGTGGCAG
GTGGGCATACCGACTGGCCTGCCAATGGGATACTCGGGCAGTGAGAACGA
AAAGGAAGTGTTTCGATACCTTCAGAAAGCACCCGCCTCCGAAATGGGCC
GCACAGGGTATTACTCTTGTCTCCCAAGAGGACGGCGGCAGTACGTCCTG
TTTTCCTTTACTCCCGTGTGAACATATTATCACCAGGGATTGCGTTTTGC
CCCGTGGCCACAGGAGATGCTGCCCGGAGCTTGGGGTAATGACTGCCGCT
GATCCTGGCCGGCAATTCTTTGAAGGCGGTTCTCATACCAAGATAACCTG
ACCGACGAGAAACATGGTGAGTGCTTTGAGGTCTAATTCTCGGGAGTATC
AGGGAAAAGAGTACCAGTGCAACTCAGGAATCT
FMO06040.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha-Est1-RA | 2123 | CG1031-RA | 187..1338 | 24..1165 | 5075 | 97.1 | Plus |
| alpha-Est2-RB | 2141 | CG2505-RB | 396..1027 | 131..763 | 530 | 73.4 | Plus |
| alpha-Est2-RA | 1958 | CG2505-RA | 213..844 | 131..763 | 530 | 73.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7547769..7548236 | 538..71 | 2340 | 100 | Minus |
| 3R | 32079331 | 3R | 7546573..7547156 | 1114..537 | 2135 | 94.5 | Minus |
| 3R | 32079331 | 3R | 7543919..7544116 | 565..763 | 360 | 79.9 | Plus |
| 3R | 32079331 | 3R | 7548891..7548938 | 71..24 | 240 | 100 | Minus |
| 2R | 25286936 | 2R | 22550414..22550565 | 165..316 | 220 | 76.3 | Plus |
| 3R | 32079331 | 3R | 7487996..7488205 | 617..408 | 195 | 72.9 | Minus |
| 3R | 32079331 | 3R | 7496807..7496855 | 454..406 | 185 | 91.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:03:39 has no hits.
FMO06040.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:52:41 Download gff for
FMO06040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Est1-RA | 187..1259 | 24..1090 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:57:09 Download gff for
FMO06040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Est1-RA | 185..1257 | 24..1090 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:40:06 Download gff for
FMO06040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Est1-RA | 187..1259 | 24..1090 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:40:06 Download gff for
FMO06040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7546597..7547155 | 538..1090 | 96 | <- | Minus |
| 3R | 7547770..7548236 | 71..537 | 100 | <- | Minus |
| 3R | 7548892..7548938 | 24..70 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:52:41 Download gff for
FMO06040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3372319..3372877 | 538..1090 | 96 | <- | Minus |
| arm_3R | 3373492..3373958 | 71..537 | 100 | <- | Minus |
| arm_3R | 3374614..3374660 | 24..70 | 100 | | Minus |
