FMO06041.5prime Sequence
1151 bp (1039 high quality bases) assembled on 2008-09-15
> FMO06041.5prime
CAGTCGACATGGAAGTGGACGAGGAAAAGCCGCAGATTATTGCTGAAAAT
CCCAACGAAAACGTGATACGCGAACGTAATGCGGAGATCGTTTCCGGCGG
CAATGTGTTCTACAATCCTGTCCAGGAATTCAATCGAGATCTGAGCATTG
CTGCTCTGAATGTTTATCGACAGAGATTGACCAAGGAGCGGAGCGAAAAG
GCGCTCAAAAAGCAGCGGAAGAAGGTCAAGGAACAGGAGGATGAGAAGAC
CACTCCCGTTCCCGAGGATCCACCTGTTTATGAGGCCGGTACTCGATATG
AGGATGGACTTCGGATCCTGGAGGCACTGGCAGCCACCGGTTTGCGTAGC
ATCCGTTACGCGCAGGAAATCGCCGGTGTACGCCAGATCGTGGCCAACGA
TCTTTCCCGCCAGGCAGTGGCCTCGATCAACACAAACATCCGGCACAACA
AGGTGGAGGAGCTGATCGAGCCCAGTCACTCCGATGCAATGACCCTCATG
TATCTTTCGACGCAACCCGAGAAGCGTTTTGATGCAGTTGACTTGGATCC
GTACGGATGTCCCAATCGCTTTTTGGATGGCGCTATGCAGTGCCTGGTGG
ACGGCGGCCTGCTGCTGGTGACAGCCACCGACATGGCCGTGCTGGCCGGA
AATGCTCCGGAAGCTTGCTATGTAAAATACGGATCGGTTCCGCTGCGGAT
GAAGTGCTGTCACGAGATGGCATTGCGCATTTTGCTGCACTGCATCGAGA
GCCACGCGAACAGGTACGGCAAGTACATCGAACCACTACTGAGCATATCA
GCGGACTTTTACATCCGGATATTTGTGCGTGTGTACGTCGGCCAGGCCCA
ATGCAGCTGTCGATGAGCAAGCAGTCTTGGATATACCATGCACCGGATGT
GAGACCTTCACGCTGCAGCCCTTGGGCATACCAAGCCAAATCCCACGGCT
GGTAATCCCCAGCAGCTGAGTCGGAATCCCACTGGTCGGCGGTCAACTCG
CATGCGACATTGCGTCACAGCATCATCTTGGGTGACCCATCTGTCGCACC
GATCATACCGATTGGGCAGATCCTTAACGGCGTCAGAAACCACTTGCATG
CTTGACGGACGATTCGTGGTCTTTCATGTCAGAGACTCGGATTCCCTTAC
T
FMO06041.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6388-RA | 1815 | CG6388-RA | 30..1087 | 9..1053 | 4920 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12428139..12428598 | 32..491 | 2300 | 100 | Plus |
| 2L | 23513712 | 2L | 12428661..12429179 | 491..1002 | 2265 | 98.5 | Plus |
Blast to na_te.dros performed 2014-11-28 19:42:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 356..412 | 178..233 | 129 | 71.9 | Plus |
FMO06041.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:32 Download gff for
FMO06041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6388-RA | 23..1092 | 1..1057 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:57:12 Download gff for
FMO06041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6388-RA | 19..1088 | 1..1057 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:06 Download gff for
FMO06041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6388-RA | 23..1092 | 1..1057 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:06 Download gff for
FMO06041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12428050..12428083 | 1..35 | 91 | -> | Plus |
| 2L | 12428143..12428597 | 36..490 | 100 | -> | Plus |
| 2L | 12428661..12429241 | 491..1057 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:32 Download gff for
FMO06041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12428050..12428083 | 1..35 | 91 | -> | Plus |
| arm_2L | 12428143..12428597 | 36..490 | 100 | -> | Plus |
| arm_2L | 12428661..12429241 | 491..1057 | 97 | | Plus |
