FMO06042.5prime Sequence
1156 bp (1038 high quality bases) assembled on 2008-09-15
> FMO06042.5prime
CAGTCGACATGGACAGCAAGGAGGTTTCGGAGGTGCCAAGGCGGGAGGTG
CGCTCCTTCCTGATGGCCCGGGATCCCTCCATCGACCGCCGCTTTCGACC
GCGACCCAACAAAAAGATGCGTCTGTTTGACAACATTCAGGAGTCGGAGG
AAGAAAGTTTTTCCGAATACTCGGACACGGAATCGGAGTACAAGTACCAG
TCGAGCGAGGCAACCGAAGGGGCCTCATGCGCTACCAGTGCGGCAGACAG
CAGCAACGTGGAAACGGGGCCACAGGTCTTCCTGCGCTTGCGTCCCGTTA
AGGATGCATCCAAAGCCTACATAGTCTCGGAAGAAGCAAATGTGCTGATC
ACTAGCTGCAAAGTGGACTCGACCAGCAACAATGTGAACCGCATGGAAAA
ACACTTTGGATTCACTTCCATCTTTGACAGCACCGTTGGCCAGCGAGACA
TCTATGATACCTGTGTGGGTCCCAAAATTATGGAGGAGGAATGTGTGACC
ATTATGACATATGGCACATCGGGGTCTGGAAAAACGTATACCTTACTGGG
CGATGATGTGCGTGCTGGAATCATTCCGCGTGCCCTGGAAAACATATTCA
CCATTTACCAGGACACCGTCTTCCGATCGCCCAAGCTGAAGCTAATCAAT
GGCAGCATCGTGTTCTTGCAGGACGACGCCTCGCTGAAAGAGCTGCAGAT
TCGGAAAAAACTTTTAGACTTATGTCCGGATATCAGTGCCCACCATCAGC
GTCTGAAGCACGTCATTGATGGCGACCACATGTTCGAAACGAAAGCTTCC
ACCGATGTTTCCGTCTTGGTTTGGGTGTCCTTCGTGGAGATCTACAATGA
CTTGTGTACGACCTGCTAGCCATTCCGCCGAAACAGGACAACTGGGGGAG
GTGCCACGAAAAACCTGAAGATCGTGGGCACAAAGGCCATGTGTTCATCA
AGGGTTTGACCAGTGTTTCGTGACGAGCAGCGAGGAGCGCTGCGTTCTGC
TCCGGCTGGTCAGCAGCGCTCCACGTACGCCTCCACCTCGGTGAACGCAA
CTCTAGTCGTCGCACTGTGTCTTTACCGTGACATACTAGTACATCGGTCG
GGCATACCAACACAGAGTTCGTAACATTCTCGCGACCTGGCCGTTCGAAC
CCGCTC
FMO06042.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sub-RB | 2123 | CG12298-RB | 101..1245 | 9..1141 | 5225 | 98 | Plus |
| sub-RA | 2460 | CG12298-RA | 101..1245 | 9..1141 | 5225 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17747437..17747978 | 550..9 | 2710 | 100 | Minus |
| 2R | 25286936 | 2R | 17746791..17747377 | 1123..549 | 2170 | 96.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:35:18 has no hits.
FMO06042.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:48 Download gff for
FMO06042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sub-RA | 92..1252 | 1..1147 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:57:16 Download gff for
FMO06042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sub-RA | 125..1285 | 1..1147 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:40 Download gff for
FMO06042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sub-RA | 92..1252 | 1..1147 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:40 Download gff for
FMO06042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17746766..17747376 | 550..1147 | 95 | <- | Minus |
| 2R | 17747438..17747984 | 1..549 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:48 Download gff for
FMO06042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13634271..13634881 | 550..1147 | 95 | <- | Minus |
| arm_2R | 13634943..13635489 | 1..549 | 99 | | Minus |
