FMO06043.5prime Sequence
1136 bp (1036 high quality bases) assembled on 2008-09-15
> FMO06043.5prime
CAGTCGACATGTCCGGCTCCGGCGCCAATCCCTTTGCCCAGTTCCAGGAG
TCATTCACCCAGGACGGCAACGTCTACAAGTATTTTGATCTGCCCTCCAT
CGACAGCAAATATGAGTCACTGCCCTTTTCCATTCGCGTTCTGCTGGAAT
CAGCGGTGCGCAACTGTGACAACTTTCATGTGCTGGAGAAGGATGTGCAG
AGCATCCTGGGATGGACTCCATCGCTGAAGCAGGAAACCAGCGATGTGGA
AGTCTCCTTCAAGCCAGCTCGTGTTATATTGCAGGACTTTACTGGCGTTC
CCGCCGTCGTGGATTTTGCTGCCATGCGGGATGCTGTCCGCGAGCTGGGC
GGCAATCCTGAGAAAATCAATCCCATCTGCCCTGGCGACCTGGTCATCGA
CCATTCCGTTCAGGTGGATTTCGTTCGCTCCTCGGACGCATTGACCAAGA
ACGAGTCACTAGAGTTCCAGCGCAACAAGGAACGATTCACCTTCCTCAAA
TGGGGAGCTCGCGCTTTTGACAATATGCTAATTGTGCCACCCGGCTCTGG
CATTGTGCACCAGGTTAACCTGGAGTATCTGGCCCGAGTGGTTTTCGAAA
GCGACAGTTCAGCGGACGGATCTAAGATCCTTTATCCGGATAGCGTTGTG
GGCACTGACTCCCACACTACAATGATCAATGGATTAGGTGTTCTCGGCTG
GGGTGTTGGCGGTATCGAGGCGGAGGCCGTAATGTTGGGCCAGTCCATTT
CCATGCTGTTGCCAGAGGTGATTGGCTACAGGCTGGAGGGCAAACTGGGC
CCTCTGGCCACATCCACCGATCTGGTGCTGACCATTACCAAGCATTTGCG
TCAGCTTGGTGTCGTCGGCAAGTTCGTGGAGTTTTACGGCCCGGAGTGCA
GAGCTCAGCATCGCGGATCGCGCCACCATCAGCAACATGTGTCCGAATAT
GGAGCCACTGTGGGTTACTTCCCAATCGATGAAAACACGCTGAGTTACAT
GCGCAAACCATCGCTCGAGAAGAAATCGATATATCCGAGTTATTGGAGCC
CCTCGAAACTTCTGACTATTTCCTGGTGGAACAGATCCAATAACCGAATC
TGTAACTTGGGACTTATCCACCATGTGACCTCGTCC
FMO06043.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Irp-1A-RA | 2882 | CG4900-RA | 64..1206 | 9..1133 | 5105 | 97.4 | Plus |
| Irp-1B-RA | 2901 | CG6342-RA | 61..1041 | 21..1001 | 1990 | 80.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22723329..22724054 | 1004..282 | 3465 | 99.4 | Minus |
| 3R | 32079331 | 3R | 10410789..10411270 | 1001..520 | 970 | 81.4 | Minus |
| 3R | 32079331 | 3R | 22724117..22724288 | 285..114 | 860 | 100 | Minus |
| 3R | 32079331 | 3R | 22724359..22724452 | 114..21 | 470 | 100 | Minus |
| 3R | 32079331 | 3R | 10411356..10411569 | 496..283 | 455 | 80.8 | Minus |
| 3R | 32079331 | 3R | 10411628..10411794 | 285..119 | 340 | 80.2 | Minus |
| 3R | 32079331 | 3R | 10412620..10412713 | 114..21 | 185 | 79.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:57:26 has no hits.
FMO06043.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:20:22 Download gff for
FMO06043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irp-1A-RA | 60..1062 | 1..1004 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:57:19 Download gff for
FMO06043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irp-1A-RA | 76..1078 | 1..1004 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:44:13 Download gff for
FMO06043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irp-1A-RA | 60..1062 | 1..1004 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:44:13 Download gff for
FMO06043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22723329..22724051 | 285..1004 | 99 | <- | Minus |
| 3R | 22724118..22724287 | 115..284 | 100 | <- | Minus |
| 3R | 22724359..22724451 | 22..114 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:20:22 Download gff for
FMO06043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18549051..18549773 | 285..1004 | 99 | <- | Minus |
| arm_3R | 18549840..18550009 | 115..284 | 100 | <- | Minus |
| arm_3R | 18550081..18550173 | 22..114 | 100 | <- | Minus |
