FMO06044.5prime Sequence
1174 bp (1059 high quality bases) assembled on 2008-09-15
> FMO06044.5prime
CAGTCGACATGGAATCCTTATCGAAGGACCCTTCCTCGGAAGGCGAACTG
CCCGAGGACGAAGGCAAAACGGACTCGGAACCCAGCAAAATATCGCGACT
GTTGCGAACGGAATTCGATGCCAAATACCAGATCGTAAACCTGCAGACTC
CTCTCAATGCCTTTATGTCGGGCCATTACAAGCAGAGCTTTGCCTTCTTC
ACACTCCGGAGTCGGCTGCCCGTGATCCTGACCAACGTGATAGATACGCT
GACACGGGACAAATCCGAGCTGGTAGCCCAATTCGCCTCAAATGAATTTT
CACAGGCTGCCCGCGAGGAGCTAAAGATCATTATTGGATTGATCTCCAGG
CTAAAGTACGAGCTGCAAACGGACAAATCGTTTCAAAACTTTACTGGCGA
AGAACCCGATCGAGATGTTTGGAACAACTTTATCAGCAACCTGCCCGATG
GCGAACGCAGCTTCTACAAAGCCAGCTCCCTCCATGCCGAGTGCTATCTG
CACCGCAAACTCCACTCCTTTCTGGAAAACAGCGTATTTCTGAAGTCATA
CGATTTCTTTGCCAAAGTCAAGGAGCAGGCGCTAACGGATAGCATTGATG
ATATACTGGCCCTGACCAAGTACACACGACGATCAGAGAACAGCGTGGAG
GTGTTCGACGAGCTTCTGAGGATCAACATGTGGAGCAACTGCAATGATGT
GGCGACCGACACGGATACAGTAAAGCAATCGAACCGCCAGGTGCTGGAGA
AAGTGGCAAACACCGATGAGCGCGTACTGGTTAAACCAGGCAGCGGAGAT
TTGGAGGTGCTTGGAAAACCCTAAACTGAAGAAGCATAAGCAGGTGGACT
TTATACTGGACAATGCAGGCTACGAACTCTTTAGCGACTTTATACTGGCT
GAGTTCATGATTGAGAAGGGACTGGCCGACAAGGTGCGGTTCCATGTGAA
GGCCCACCCTTTGGTTTGTCACCGATGTGACGAGCGGGACTTCAAGTGGA
CGCCTGGAGTACTTGAGTGAGCATGCGACTACATTATAAGTTCTGATAGG
AAAGAGTCCTACATCATCGATGAGGAAAGTTCGAACTGCGCAATCTCGCA
TTCTGAACATCACCCCCCTTTCGTTACGCATGGCGCAAATGGATCCAGAT
TGGAAGTCTGCACTACAGCGTGGT
FMO06044.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2921-RA | 1597 | CG2921-RA | 104..1253 | 9..1151 | 5290 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22074049..22074701 | 1055..401 | 2985 | 99.1 | Minus |
| 2R | 25286936 | 2R | 22074929..22075205 | 285..9 | 1385 | 100 | Minus |
| 2R | 25286936 | 2R | 22074755..22074872 | 402..285 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:48:32 has no hits.
FMO06044.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:44 Download gff for
FMO06044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2921-RA | 97..1253 | 2..1151 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:57:22 Download gff for
FMO06044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2921-RA | 126..1282 | 2..1151 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:29:58 Download gff for
FMO06044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2921-RA | 97..1253 | 2..1151 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:29:58 Download gff for
FMO06044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22073882..22073904 | 1129..1151 | 100 | <- | Minus |
| 2R | 22073967..22074699 | 403..1128 | 97 | <- | Minus |
| 2R | 22074755..22074871 | 286..402 | 100 | <- | Minus |
| 2R | 22074929..22075212 | 2..285 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:44 Download gff for
FMO06044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17961387..17961409 | 1129..1151 | 100 | <- | Minus |
| arm_2R | 17961472..17962204 | 403..1128 | 97 | <- | Minus |
| arm_2R | 17962260..17962376 | 286..402 | 100 | <- | Minus |
| arm_2R | 17962434..17962717 | 2..285 | 98 | | Minus |
