FMO06045.5prime Sequence
1167 bp (1051 high quality bases) assembled on 2008-09-15
> FMO06045.5prime
CAGTCGACATGGCGCGCGAGGACGAGGAACGCATCGTGGACAATGAGGAG
GTGTCGCGACCGACGGAGGAGGACCAAGTGGTCAGTCGGGCCGGTCGGCG
TGACAATGAACTGAGCCTTCCGTCCGGCGGCTGCTGCATGCCCTCGAGCA
CGAGCCACCGCTTCATGGCTCTGGTGTTCATGTGCCTGCTGGGATTCGGC
TCCTATTTCTGTTACGATGCACCCGGCGCCCTGCAGAACTATTTCAAGAA
AGATCTTAATCTGACCTCCGCCCAGTTCACACTCATCTACTCGATTTACT
CGTGGCCCAATGTCGTCCTGTGCTTCGTGGGAGGTTTCCTGATCGATCGA
CTGTTTGGCATTCGACTGGGCACGATTATCTACATGATGATCCTGCTGGT
GGGTCAGTTGATCTTTGCCTGCGGCGGCATTCTGGACGCCTTCTGGATGA
TGATCCTGGGACGGTTTATCTTCGGCATTGGCGCCGAATCACTGGCGGTG
GCCCAGAACAGCTATGCGGTGCTCTGGTTTAAGGGCAAGGAACTGAACAT
GGTATTCGGCCTGCAGCTGTCGGTTGCCCGATTCGGCAGCACCGTCAACT
TCTGGGTGATGCAGCCCATCTATGAGTATGTGAGCAATTTTTACAAGGGA
CATACCGCTCTAGGCGTCGTCTTATTGCTGGCTACCCTCACCTGTGTGAT
GTCGATGACCTGTGCCCTCATCCTCGGCTGGATGGACAAGAGGGCCGAGC
GGATTTTGCAGCGTAACAACAACCCGGCTGGACAGATACCGAAACTCACC
GATGTCTTTTCGTTCAAACCACCCTTTTGGATGGTATCCATCATTTGCGT
CGCCTACTATGTGGCCATCTTCCCATTTCATTGCCCTCGGACAGAATTTC
TTTGTTGATCGCTTCGGGCTTTCGCCTGCTGAGCCAACACCGTGGACTCG
CTGGTGTATCTAATTGCAGCCGTATCGTCTCGGGCTTTGGTTTCATCATC
GACAACTGGGGTAGAATTGTGACCTGGGGTGTTCACGGCGACACTGACCA
CCATTGGAGCCCATGCCTGTCTTACTTCCCAGCTGGACACCTTTGGGGCA
GACATATGGGACGTGCCGAATCATGCTGCCGAGCCTGTGGACTCGGGTGC
TTCATCATATCGGAATC
FMO06045.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:23:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8602-RB | 2318 | CG8602-RB | 508..1685 | 2..1166 | 5115 | 96.7 | Plus |
| CG8602-RA | 2570 | CG8602-RA | 508..1685 | 2..1166 | 5115 | 96.7 | Plus |
| CG12194-RB | 2105 | CG12194-RB | 497..965 | 145..613 | 905 | 79.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:23:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7327270..7328335 | 1067..2 | 4990 | 98.7 | Minus |
| 2L | 23513712 | 2L | 4839579..4839991 | 201..613 | 850 | 80.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:23:32 has no hits.
FMO06045.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:21:26 Download gff for
FMO06045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8602-RA | 507..1594 | 1..1085 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:57:25 Download gff for
FMO06045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8602-RA | 523..1610 | 1..1085 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:10:26 Download gff for
FMO06045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8602-RA | 507..1594 | 1..1085 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:10:26 Download gff for
FMO06045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7327270..7328335 | 1..1067 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:21:26 Download gff for
FMO06045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7320370..7321435 | 1..1067 | 98 | | Minus |
