FMO06046.5prime Sequence
638 bp (638 high quality bases) assembled on 2008-09-15
> FMO06046.5prime
CAGTCGACATGGCAAAGAAAACCTACGATTTGCTCTTTAAACTGTTGCTG
ATCGGTGATTCAGGAGTGGGCAAGACGTGCATATTGTTCCGGTTCTCGGA
TGATGCATTCACGTCCACGTTCATATCGACCATAGGCATCGATTTCAAAA
TCAAAACAGTCGAGCTGCGCGGCAAGAAGATCAAGCTGCAAATATGGGAC
ACCGCCGGCCAGGAGCGGTTCCACACGATAACCACCTCGTACTATCGAGG
CGCCATGGGCATAATGCTGGTCTATGACATAACGAACGAGAAGAGTTTCG
AGAACATAGTCAAATGGTTACGGAATATAGACGAGCACGCCAACGAGGAT
GTGGAGAAGATGATCCTCGGCAACAAGTGCGATATGACGGACAAGAGGGT
GGTCAACAAGGAGCGCGGCGAAGCGATTGCCCGTGAACATGGCATTCGGT
TTATGGAAACATCCGCCAAGTCGAACATAAACATCGAGCGGGCCTTCTGC
GAGCTGGCCGAGGCCATTCTGGACAAGACATCAGGACGCGAGTCGGCGGA
GAATCAGGAGCGCGTGATTATCGATCGCCGGAACCAGGAGAAGGCGCCGG
GCTACAGCAAGTGCTGCGCGGCAAGCTTTCTAGACCAT
FMO06046.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab10-RA | 2336 | CG17060-RA | 294..905 | 9..620 | 3060 | 100 | Plus |
| Rab8-RC | 2043 | CG8287-RC | 581..1033 | 18..470 | 540 | 74.9 | Plus |
| Rab8-RA | 2263 | CG8287-RA | 581..1033 | 18..470 | 540 | 74.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20252236..20252437 | 134..335 | 1010 | 100 | Plus |
| X | 23542271 | X | 20253065..20253260 | 425..620 | 980 | 100 | Plus |
| X | 23542271 | X | 20251631..20251758 | 9..136 | 640 | 100 | Plus |
| X | 23542271 | X | 20252506..20252597 | 334..425 | 460 | 100 | Plus |
| 3L | 28110227 | 3L | 19869109..19869308 | 395..196 | 250 | 75 | Minus |
| 3L | 28110227 | 3L | 19870380..19870498 | 136..18 | 220 | 79 | Minus |
| 2L | 23513712 | 2L | 7031898..7031949 | 222..171 | 215 | 94.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:04:48 has no hits.
FMO06046.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:19 Download gff for
FMO06046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab10-RA | 291..908 | 6..624 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:56:56 Download gff for
FMO06046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab10-RA | 252..869 | 6..624 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:56 Download gff for
FMO06046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab10-RA | 291..908 | 6..624 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:56 Download gff for
FMO06046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20252238..20252437 | 136..335 | 100 | -> | Plus |
| X | 20252508..20252597 | 336..425 | 100 | -> | Plus |
| X | 20253066..20253263 | 426..624 | 98 | | Plus |
| X | 20251628..20251757 | 6..135 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:19 Download gff for
FMO06046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20124140..20124337 | 426..624 | 98 | | Plus |
| arm_X | 20122702..20122831 | 6..135 | 99 | -> | Plus |
| arm_X | 20123312..20123511 | 136..335 | 100 | -> | Plus |
| arm_X | 20123582..20123671 | 336..425 | 100 | -> | Plus |
