FMO06048.5prime Sequence
1156 bp (1048 high quality bases) assembled on 2008-09-15
> FMO06048.5prime
CAGTCGACATGATGAGCCTGCTGGGGCGCACCGATGTGGATGCGGGCGAA
GTGTTCGTCAACTTCAACCAGAACATAACTTCCCTGGCCGTGGCCACCAG
TGGAGGCTACAGCCTGTACAGCCTGGGCTCCGTGGACTCGACCCTGGACA
AGATCTACCACACGAAAAGCGACGAGCTGTTCCTCATCGAGCGTCTGTTC
GAGAGCTCCTTGGTGGCAATAGTTTCCCAGCGAGCACCACGCAAGCTCAA
GGTGTGCCACTTTAAGAAGCAGAGCGAGATCTGCAACTACTCGTATGCAA
ACACAATACTGGCCGTGAAGCTCAATCGCGAGCGATTGATTGTGTGCCTG
GAGGAGTCATTGTATATCCACAATATCCAGGACATGAAGGTGGTGCACAC
CATACGCGACACACCGTGCAATCCGCAGGGTCTTTGTGCCCTCTCCTCGT
CGTCGGAGCACTGCTATCTGGCCTACCCAGGCAGCGTGACTGCTGGCGAG
GTACAGATCTTTGATGCCATCAACTTGCACGCCAAGACCATGATTCCCGC
CCACGACACACCTCTGGCGGCATTGGCCTTTAGTCCCTCGGGCACGGAGA
TAGCCACGGCCAGTGAGCGTGGCACGGTGATCCGAGTCTTCAGCTCCCAG
GATGGCAGTCGACTCTTTGAACTGCGACGGGGACTAAAGCGCTGTGTGTC
CATCGTTTCGCTGTCGTTTAGCACGTGCGCCGAATATCTGGTGTCCAGCT
CCAACACCGAGACGGTTCACATCTTCCGGCTGGATCGCAGTGCCACGGAA
ACAGCCGAAGGCCATGGCAGCAAGCAGTCGAGCGACGACTGGATGGGTTA
CTCGTTTTTAGATCTTAAGCAAACGGTCACCAGCTACCTGCCCACGCAGG
TGACCGACGTGTTTAGCCAGGCCGTGCCTTCGCTCGGTCACTCTGCCGGA
GCGGGAGTGCGCAGATGTGCGCTATGCCACGATACAAAAGCAGCTAGACT
TTGATGCTCGCAGGATGGTTACTTGTACTGTATCATTCCACGTCGAGGGC
GCGAGTGCCACTAATTAAAAGACCGAACTTGCCGCTGAGAACACTATGGC
AAGGATATCAAGGTGCTTCAAGCTTCTAGACATTCGTTTGGCGCGCGGGC
AGTAGG
FMO06048.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:23:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg18a-RG | 2235 | CG7986-RG | 364..1496 | 8..1118 | 4930 | 97 | Plus |
| Atg18a-RC | 2526 | CG7986-RC | 251..1383 | 8..1118 | 4930 | 97 | Plus |
| Atg18a-RB | 2382 | CG7986-RB | 511..1643 | 8..1118 | 4930 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:23:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8187813..8188580 | 80..847 | 3840 | 100 | Plus |
| 3L | 28110227 | 3L | 8189313..8189443 | 871..996 | 405 | 96.2 | Plus |
| 3L | 28110227 | 3L | 8187505..8187576 | 8..79 | 345 | 98.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:23:16 has no hits.
FMO06048.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:21:16 Download gff for
FMO06048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg18-RA | 219..1307 | 1..1072 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:22:34 Download gff for
FMO06048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg18-RC | 238..1326 | 1..1072 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:10:15 Download gff for
FMO06048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg18a-RB | 504..1592 | 1..1072 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:10:15 Download gff for
FMO06048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8187498..8187576 | 1..79 | 93 | -> | Plus |
| 3L | 8187813..8188580 | 80..847 | 100 | -> | Plus |
| 3L | 8189287..8189445 | 848..997 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:21:16 Download gff for
FMO06048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8180598..8180676 | 1..79 | 93 | -> | Plus |
| arm_3L | 8180913..8181680 | 80..847 | 100 | -> | Plus |
| arm_3L | 8182387..8182545 | 848..997 | 94 | -> | Plus |
