FMO06049.5prime Sequence
1152 bp (997 high quality bases) assembled on 2008-09-15
> FMO06049.5prime
CAGTCGACATGAGTCTGCCCCAGTTGATCGAGGATCTGCAGCGCCTTTCC
GAGGATCAGGATAGTGCAGATGTGGTATTCATTTGTGGCAGAGATGAGCG
CATATATGCCCATAGATTAATGCTAATGGCTCGGTGCAAGAGCTTCAAGA
CTGCGAAGAGAGGTGAAGTGTGTCGAATTCCCGGATGCACAGTATCGCCA
GCAGCCCCAGGAGCTTCAACTCCGACCACCATACGATTACCACACGTGAA
TCCGGAACTATTCAGGCAGTTCATCTTGTACGTTTACACCGCAAAGTTGG
TTCTCCAGGACTCGCAAGTATTTCAAATGATGATATTGGCACAGGATATC
GGTGTGGTTGAGCTACGAACTGCCTGCGAGGATCACGTTATATCGACATT
GTCGGTGGATAATGCCTGCACATTTTTAACCGCCGTTATGGATATACACG
AAAAAGCAGGTGCCAAATGCGCTGCCTCGTTTATGGAACGCTGCATCATC
TACATAGGGGAAAATGCAAATGAGTGCGTTAAGACTAATGCCTTCCTTAC
TTTAACAAAGGATGCCATTATTAAGATTATTTCCTCAGACTATTTCTGCT
TGGAAGAGGAGGAAGTGTGGCGCTGCGTTTTATCCTGGGCCAAATACCAG
GCAGGAGTCACCCAACCCACTGCACATTGGACTGAGGAGGAGCGTGCTCG
TGTCTGCCAACACTTAAAGCGGTGTAATGGGTCACGTGCGTCTGCTTCTC
ATCGATAGCAAGTTTTCGCGGAGGAAGTGGAACCTACAGGAGCTGTACCT
ATGGAACTATCCCTAGAACGATATCGCTATGCCGCTTGCATGCCAATAAG
ATGATGGATAACGATAAGAAGACTTCAGCCCCGCTAGCTTGTAGCGGTCA
AACATGTTTCCCGGATCCCAATCCTGAAGAATTGACAATCTGGCACTACA
GACTGTCCTCATAATTGGGTTGGAGTGGGCAGCAATCCTGGAAGATTAGT
TTCGAGCGTCCACTCATGGCTACGGATTCTGGAGCCTTTCATCGTATTGC
ACGGCCTTGCTCTTGCATGTTATTGCTGGAATCGCATTGAAGATCATGAT
GTATACGGATGTGGCGTGGCCAAACAAGCGAAAGTGATTGTCAGTCCAGC
GA
FMO06049.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7102-RB | 2264 | CG7102-RB | 461..1601 | 8..1134 | 4970 | 97 | Plus |
| CG7102-RA | 2075 | CG7102-RA | 461..1601 | 8..1134 | 4970 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7884129..7884581 | 1045..594 | 1590 | 95.9 | Minus |
| 2L | 23513712 | 2L | 7886306..7886472 | 461..295 | 835 | 100 | Minus |
| 2L | 23513712 | 2L | 7886535..7886698 | 296..133 | 820 | 100 | Minus |
| 2L | 23513712 | 2L | 7884655..7884791 | 593..457 | 685 | 100 | Minus |
| 2L | 23513712 | 2L | 7886926..7887053 | 135..8 | 640 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:04:45 has no hits.
FMO06049.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:17 Download gff for
FMO06049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7102-RA | 453..1499 | 1..1045 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:57:36 Download gff for
FMO06049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7102-RA | 429..1475 | 1..1045 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:55 Download gff for
FMO06049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7102-RA | 453..1499 | 1..1045 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:55 Download gff for
FMO06049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7886308..7886470 | 297..459 | 100 | <- | Minus |
| 2L | 7886535..7886697 | 134..296 | 100 | <- | Minus |
| 2L | 7886928..7887057 | 1..133 | 96 | | Minus |
| 2L | 7884129..7884581 | 594..1045 | 96 | <- | Minus |
| 2L | 7884655..7884788 | 460..593 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:17 Download gff for
FMO06049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7884655..7884788 | 460..593 | 100 | <- | Minus |
| arm_2L | 7886308..7886470 | 297..459 | 100 | <- | Minus |
| arm_2L | 7886535..7886697 | 134..296 | 100 | <- | Minus |
| arm_2L | 7886928..7887057 | 1..133 | 96 | | Minus |
| arm_2L | 7884129..7884581 | 594..1045 | 96 | <- | Minus |
