FMO06050.5prime Sequence
1158 bp (1038 high quality bases) assembled on 2008-09-15
> FMO06050.5prime
CAGTCGACATGGCTCCGAACGATGCAGTTGCGGAGCACGCGGAGGAGCAG
CCAAAGATTTCCACATTTGCCGTTCTGGACCTAGAGACCACCAACTTGCC
TGCCTACAGGAACAACCGAGTGAGCATTACGGAGTTGTGCATTTACGCCT
TTGAAGCCGCGCTCCTTAAGAAGAAAAAGAAGGAGCAGGACCAGGATGAG
CAGCAGGAGCTGCCAGCGGCACCGCGGGTGCTGCACAAATTGAATGTGCT
CTTCCAGCCGTCCATGGTAGTGGACCCGGAAGCGGAGAGAATAACAGGTC
TGAGCAACTACTTGCTGGAGCGGGAGTCCCAGCTAGACACGGATGCCGCG
CAACTCATCGTCAGTTTTCTAAAGCACTTGCCGAGTCCGGTTTGCCTGGT
GGCTCACAATGGTTGGGGCTTCGATTTTCCCATTCTGAGGCAGGCATTTG
AGAAACTAAACATAGAGCTTCCCCAATCCCTGACTTGTGTTGACTCACTG
CGCGCCTTCATGGAGATTGACGACACACAACAAAAAGAAACCAGTCAGTT
GAAAGTACCCAACGATGTGCAGGAAATCATTCCGGAGCTGAAACCCAAAC
AGAATACTGAAACTTGCCTCAAGGAGCCAGAAGCGGTCGTGAACATCGAT
TGGCGAACCAGAAACGAAACCACTCCAAATCGTCCAATTTTAAAGCCTAC
AGAGGCATTCGCCAAGCGTAAGTTATTACGCGACGGCGATGAGGATGACT
TGGAGGAGCAGACCCCTCCCAAGCGGAAACCCGATGAGTTTAGGTCACGA
CGCCAGCTGTTCAGTGGATGCAAGTGTGCCGAGAACAAACGCTATCCCCC
CCGCGGAGTTTATAATTTGGAAAGTCTTTACACGAGATAATTTAAGATAC
CAGCACTTAGTGCTCACCAGGCAGAGGCTGATGTAGTCATGACCACAAAA
CTGATACAGCATTACGGCATTGATTTCTTGCCTTCGCCGAGGAGCAGGCA
ATCCATTCCAGCAGTGGTGCACTGGCTTCTCTGTTTGTCGAAAAGAGCGC
ATCGTTAGCTTTCTAGACATCGTTTGGCCCGCGGGCCAGTAGTGTCTAAT
CATATCTAATCCTAATCTAAATCACTAGGCTAAAGGAATCCTGTAATGAA
TTATGCTT
FMO06050.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:00:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3165-RB | 1221 | CG3165-RB | 121..1170 | 9..1051 | 4965 | 98.7 | Plus |
| CG3165-RA | 1323 | CG3165-RA | 121..1170 | 9..1051 | 4965 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:00:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2977585..2978304 | 296..1013 | 3425 | 99 | Plus |
| 2L | 23513712 | 2L | 2977242..2977532 | 9..299 | 1455 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 22:00:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G2 | 3102 | G2 G2 3102bp | 420..468 | 6..53 | 125 | 75.5 | Plus |
FMO06050.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:46 Download gff for
FMO06050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3165-RA | 121..1170 | 9..1051 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:57:37 Download gff for
FMO06050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3165-RA | 116..1165 | 9..1051 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:10 Download gff for
FMO06050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3165-RA | 121..1170 | 9..1051 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:10 Download gff for
FMO06050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2977242..2977530 | 9..297 | 100 | -> | Plus |
| 2L | 2977587..2978344 | 298..1048 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:46 Download gff for
FMO06050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2977242..2977530 | 9..297 | 100 | -> | Plus |
| arm_2L | 2977587..2978344 | 298..1048 | 98 | -> | Plus |
