FMO06052.5prime Sequence
1145 bp (1005 high quality bases) assembled on 2008-09-15
> FMO06052.5prime
CAGTCGACATGGCAACGGTGTTTCTTGGAACTGTCGTGCACACCAAGTCG
TTCAGCGAGTTTGAGTCCTTTGAAGGAGGATTCCTGGCAGTGGACGACGC
TGGCAAGATAATAGGAGTGGGACAAGACTACCATGCGTGGGCAAGCAGCA
ATCCGGCCCACGCCAAGGGTCTGACCGAGGTTCACCTGTCGGACTACCAG
TTCCTCATGCCGGGCTTCGTCGACTGCCACATACACGCCCCGCAGTTTGC
GCAACTGGGACTGGGACTAGACATGCCTCTTCTGGACTGGTTGAACACAT
ACACTTTCCCGCTGGAGGCGAAGTTTTCCAACCACCAATACGCCCAGCAG
GTCTACCAGGGTGTGGTCGAAGCAACACTGCGGTGCGGAACCACTCTGGC
GTCCTATTTCGCCACCAACCATCTGGAGTCAACGCTGACCTTGGCGCGGG
AGGCGGTGCGTCAAGGCCAGCGGGCACTGATAGGCAAGGTCTGCTCCAAC
TGCAACAGCCCCGAGTTTTACGTGGAGACTGCGGAAGAGTCGGTCAGTGC
AACCCTGGCTTTCGTGGAGGGCGTGCGGAAGCTCGGCAGCCCGATGGTGA
TGCCAACGATTACGCCCCGCTTTGCCCTTAGCTGCAGCAAGGAGCTGCTA
AAGAGTCTGGGCGATATAGCAAAGCGATTTGACCTGCATATCCAGAGTCA
CATCAGCGAAAACCTGGAAGAGATCGAGATGGTAAAGGGGATATTTAAGA
CCAGCTATGCCGGAGCATACGACGAGGCTGGACTGCTAACGAATAAGACT
GTACTGGCTCAACGGCGTGCATCTGGAGGACGGACGAGGTGGCACTTCTT
AAAGTCCGGGGGTGCTCGGTAGCCCACTGTCCCACTTCCAACACATGCTA
AGCTCCGGTCTGTGCGATGTCAACGGCTGGTGAGCGGCGGGCGTGAGCGT
AGTCTCGGCACAGACGTTTCGGGGGAAACTCCGTCTCCGATTCAAGACGT
TCTGCTCGCGCATTGGACTGTCAATACTTAGACTTTTTAGAAGCAGACTT
CGCGGACGGTGTGTCCAAAACCAGATTTCATACATCATTGAATCAGCAGC
CTCACCTTGCCTTGGGCGCACAAGCCTTTCTCGATCCTGACGAAC
FMO06052.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:25:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DhpD-RA | 1590 | CG18143-RA | 96..1179 | 9..1080 | 4885 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:25:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4228148..4228421 | 797..524 | 1370 | 100 | Minus |
| 3R | 32079331 | 3R | 4228727..4228990 | 369..106 | 1320 | 100 | Minus |
| 3R | 32079331 | 3R | 4228479..4228634 | 524..369 | 780 | 100 | Minus |
| 3R | 32079331 | 3R | 4227871..4228094 | 1018..796 | 660 | 95.2 | Minus |
| 3R | 32079331 | 3R | 4229045..4229143 | 107..9 | 480 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:25:52 has no hits.
FMO06052.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:32:20 Download gff for
FMO06052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DhpD-RA | 89..1189 | 1..1087 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:57:40 Download gff for
FMO06052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18143-RA | 100..1200 | 1..1087 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:22:27 Download gff for
FMO06052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DhpD-RA | 89..1189 | 1..1087 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:22:27 Download gff for
FMO06052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4227788..4228092 | 798..1087 | 91 | <- | Minus |
| 3R | 4228148..4228421 | 524..797 | 100 | <- | Minus |
| 3R | 4228480..4228634 | 369..523 | 100 | <- | Minus |
| 3R | 4228728..4228988 | 108..368 | 100 | <- | Minus |
| 3R | 4229045..4229147 | 1..107 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:32:20 Download gff for
FMO06052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 54202..54356 | 369..523 | 100 | <- | Minus |
| arm_3R | 53510..53814 | 798..1087 | 91 | <- | Minus |
| arm_3R | 53870..54143 | 524..797 | 100 | <- | Minus |
| arm_3R | 54450..54710 | 108..368 | 100 | <- | Minus |
| arm_3R | 54767..54869 | 1..107 | 95 | | Minus |
