FMO06054.5prime Sequence
1156 bp (1044 high quality bases) assembled on 2008-09-15
> FMO06054.5prime
CAGTCGACATGTCAGGCGTGGATCAGATGAAAATACCAGGAAACACAGCT
AAATCGGTCGAGGAGCGCAACATACCATGGAGTCAGCAAGTCGATGAGGC
CTCGTACGAAAATCTATCCTCTCCCACTCACGATGAAGTCTCTGGCAATG
ACAACTCCATGCAATTCCAATATCCGCCGTTCAACTTCAAGGAGAATTGC
AACACTCCATGGAACAATATGAACAAGGGCCGAAAGGCGAACGCCAACCA
TGATTCATATAGAAGACATGGTCATAGTATTCCCAATAACACACGACGCG
ACGAGCACCAAGTAAATCCTTGGAATTCCAGGAAGCCAGCAGCACAGTCG
TTTCGAAATGAAAACGATCAGCCGTCTACAAAACTGGACAACAGAACAAG
CGATGAAGCACAAAATCAAGAAGTTGTCGCCGCTCCCAAGAAGACAACCT
GGGCCTCGATTGCCTCCCAGCCAGCCAAACTAACATCGAGAGCAGCGTCC
ACCACTTCCAACAGCAAGAAGAAGGGTCCTGGCATGCCACCACCACCCAT
GGTTCCGGGAAAGCACAATTTAGATGTTAACGTATGGGATTTGCCGAATA
ACAAACCACCTCCTGTACCATCTCCACCCTCGCCGATCGATTTGGGCTAT
TCCGACTTGAGTTCTGACTTCTCCATATCGAGCAACACGGCACCGCCATT
GGGCGCACGAGCCGAGAAAGTGCACAAGGATACGGAGAACTTCCTGAAAT
ACGAGCACAAGGGCTTGGGAAATAAACAATAACTTCAGCAGAGCCAAGGT
TTCGCCCACGGGGACCTGTTCGCAAGAATCTAGGGGCCCCAGCAGCCTGT
CCACCATGCCGCCCCACGTCCAGCGACCAATGCCCGGTCCATTTGGGCCA
CCGAACGCCAGACGACACGACGGCGGGCCGCATCCAAGCCGGAACTCAGG
AGCGCTCGGGCAACTATTCCAGTTTCGCGGCAGCGAGTTTGAGAAGTGCT
TCGAAGTTCGAATACCGCGACGAGAACCATCACGACGGTGAAGCCACATC
TGCACGAGAGCTGCCTGTCGATCCAACTCGTGTTGGACGATTAAAGACAA
AACAATACACCAAAGTGTGGACTGAAAAGCGATCGCGAATTCTTGTCTCA
TCGATT
FMO06054.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6422-RD | 2862 | CG6422-RD | 323..1421 | 9..1102 | 5105 | 98.4 | Plus |
| CG6422-RA | 2965 | CG6422-RA | 157..1255 | 9..1102 | 5105 | 98.4 | Plus |
| CG6422-RC | 2616 | CG6422-RC | 91..1175 | 23..1102 | 5035 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25035730..25036331 | 1090..492 | 2355 | 96.7 | Minus |
| 3R | 32079331 | 3R | 25036392..25036538 | 492..346 | 735 | 100 | Minus |
| 3R | 32079331 | 3R | 25038211..25038319 | 252..144 | 545 | 100 | Minus |
| 3R | 32079331 | 3R | 25038420..25038519 | 145..46 | 500 | 100 | Minus |
| 3R | 32079331 | 3R | 25036623..25036718 | 347..252 | 480 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:43:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Burdock | 6411 | Burdock DMU89994 6411bp Derived from U89994 (g1905850) (Rel. 51, Last updated, Version 1). | 4952..5064 | 707..817 | 119 | 57.5 | Plus |
FMO06054.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:03 Download gff for
FMO06054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6422-RA | 151..1264 | 1..1109 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:57:43 Download gff for
FMO06054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6422-RA | 147..1260 | 1..1109 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:29 Download gff for
FMO06054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6422-RA | 151..1264 | 1..1109 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:29 Download gff for
FMO06054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25035707..25036331 | 492..1109 | 96 | <- | Minus |
| 3R | 25036393..25036536 | 348..491 | 100 | <- | Minus |
| 3R | 25036623..25036717 | 253..347 | 100 | <- | Minus |
| 3R | 25038211..25038318 | 145..252 | 100 | <- | Minus |
| 3R | 25038421..25038516 | 49..144 | 100 | <- | Minus |
| 3R | 25038653..25038674 | 27..48 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:03 Download gff for
FMO06054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20861429..20862053 | 492..1109 | 96 | <- | Minus |
| arm_3R | 20862115..20862258 | 348..491 | 100 | <- | Minus |
| arm_3R | 20862345..20862439 | 253..347 | 100 | <- | Minus |
| arm_3R | 20863933..20864040 | 145..252 | 100 | <- | Minus |
| arm_3R | 20864143..20864238 | 49..144 | 100 | <- | Minus |
| arm_3R | 20864375..20864396 | 27..48 | 100 | <- | Minus |
