FMO06055.5prime Sequence
1132 bp (1057 high quality bases) assembled on 2008-09-15
> FMO06055.5prime
CAGTCGACATGTCTATTCGGGAGAAGCTGCTGATGAAGAAGATCGTTAAG
CGGGAGAAGATGAAGAAGGAGCTCTCGCAGAAGAAGGGAAACAAGAACGC
CCAAAAGCAGGAGCCACCCAAACAAAATGGCAATAAACCCAGTAAAAAAC
CGGAGAAACTCAGTAAAAAGCATGTGGCCAAGGATGAGGATGACGACTTA
GAGGAGGATTTCCAGGAGGCGCCGCTGCCCAAGAAGAAGCAACAAAAACA
GCCTCCAAAAAAGCAACAAATTCAGGTGGCCAACTCGGATTCGGAATCAG
ATGACGATGAGCAGGAGGATGAGGCAGATGAGGATAGCGATTTGGACGAA
GTAGCCGAAGTTGATGAGGAGGATGTTGACAGCGGGAGTGAAGATGATGA
CCAGCAGGAAGATGAAGATGAAGAAGAACCTGTGCCAGCCAAGAAAACGA
AGTTGCTTCCCAACAAGTCCAAGGCACAGAATGGCAAACCAGCTAAAGAC
GACGAGCCCTTTACCGTGGAATCCTCACTGGCTGCACTGGATTACCGAGA
TTCGGATGATCGCAGCTTTGCCTCTTTAAAGGGCGCCGTGTCCGAGGCCA
CATTGCGAGCCATTAAGGAGATGGGTTTTACCGAGATGACTGAAATTCAG
TCGAAATCGCTGACACCCCTACTAAAGGGACGGGATCTGGTGGGTGCTGC
CCAGACGGGTTCCGGCAAAACCCTGGCCTTCCTGATACCCGCCGTCGAGC
TGATAAACAAGCTGAGGTTTATGCCACGCAATGGTACCGGCGTGATCATC
ATCTCACCTACCCGAGAGTTGTCCATGCAAACTTTCGGTGTGCTCAAAGA
GCTGATGGCACACCACCATCACACTTATGGCTTGGTAATGGGCGGCTCCA
ATCGGCAGGGGAGAGCGAGAGTTGGGCAAGGGCATCACATTCTGGTGGCC
ACACCGGGTCGTCTGCTGGATCATTTACAAAACTCGCCCGACTTTCTGTA
CAGACCTTCAGTGCTGATTATCGATGAGTGATCGAATTCTGAGATCGTTT
TGAGGAGAGCTTAGCAATAATAAATCTGCTGCAACGCGCCGGACGATGTC
CTTCTCGGCAACAGACGTTCATCGAGCGCTTT
FMO06055.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:26:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pit-RC | 2803 | CG6375-RC | 119..1240 | 9..1113 | 5145 | 98.1 | Plus |
| pit-RA | 2270 | CG6375-RA | 119..1240 | 9..1113 | 5145 | 98.1 | Plus |
| pit-RB | 2324 | CG6375-RB | 173..1294 | 9..1113 | 5145 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:26:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22036505..22037128 | 410..1027 | 2840 | 98.9 | Plus |
| 3R | 32079331 | 3R | 22036075..22036297 | 189..411 | 1115 | 100 | Plus |
| 3R | 32079331 | 3R | 22035835..22036015 | 9..189 | 905 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:26:03 has no hits.
FMO06055.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:32:27 Download gff for
FMO06055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pit-RA | 112..1225 | 1..1098 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:57:44 Download gff for
FMO06055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pit-RB | 166..1279 | 1..1098 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:22:32 Download gff for
FMO06055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pit-RB | 166..1279 | 1..1098 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:22:32 Download gff for
FMO06055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22035828..22036015 | 1..189 | 97 | -> | Plus |
| 3R | 22036076..22036297 | 190..411 | 100 | -> | Plus |
| 3R | 22036507..22037190 | 412..1082 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:32:27 Download gff for
FMO06055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17861550..17861737 | 1..189 | 97 | -> | Plus |
| arm_3R | 17861798..17862019 | 190..411 | 100 | -> | Plus |
| arm_3R | 17862229..17862912 | 412..1082 | 98 | | Plus |
