FMO06056.5prime Sequence
1002 bp (985 high quality bases) assembled on 2008-09-15
> FMO06056.5prime
CAGTCGACATGTCTGACAACAACAGCGGATCCGGAGGAGGTGGAAGCGGT
GGCGGTGGCGCCGGTAACAATAACAGTGCCAATAGTGGTAAGAACTCGAC
GCACAGGTTCGCTGAGACCAGTGTGATCACCAATCAATTGTTGGAAAAAT
GGCGGAAAAACTTCTACAGCGAACCGAAGAATCTGCTGGCGCAGAACGTC
TGCTCACGCGTTGATCCGTTCGATGTGTGCCTGTCCAGGAAGGCACTGGA
GACCACCAATCATGTGTTCAACTACAAGGTGGAAACGGAGGGCAAGCCGG
TGACCAATCAAAGGAGCTCCGGCCGCTGCTGGCTGTTTGCGGCCCTCAAC
TGCATCCGCCTGCCATTCATGAAGAACTACAATCTGGACGAGTTCGAATT
CTCGCAGGCCTTCCTCTTCTACTGGGACAAGATCGAGCGTTGCAACTACT
TTCTCAACAATGTTGTGAAGACGGCACAGCGCGGCGAGAAGGTTGATGGT
CGTCTGGTGTCGTTCCTGCTACTCGATCCCACCTCCGATGGCGGCCAGTG
GGACATGCTGGTCAATCTGATAACCAAACACGGCCTTATGCCAAAGAAAT
GCTTTCCCGAGAGCTTCAGCTGCGAGTCCAGCTTACGAATGAACGCCATA
CTGAAGAGCAAGCTACGGGAGTATGCCCGCAATTTGCGCGTGCTGATGGA
GAAGAATCCCACGGATGAGGAGATCGCCTGCAAGATCCAGGAGCAAATGG
CCGAGATCTACAAGGTGGTTGGCATTTGCCTGGGCATACCCTCGGAGACC
TTCACCTGGGAGTACTATGACAAGAGCAAGAACTATCAGTCAATCGGACC
CGTTAGTTCGCTGGAGTTCTATGACCGTTATGTTAAGCGCATTTCACGTG
AAGGACAAAGTGTGCCTGGCACCGATCCTCGGCGACGAGTACTATTAACC
AGCCTACCCTGTTGACTGCTGGGCAACTGGTGGCGGGCGACCCGTCCTGT
AT
FMO06056.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:26:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1440-RA | 1877 | CG1440-RA | 235..1236 | 9..1002 | 4660 | 98.3 | Plus |
| CG1440-RB | 1969 | CG1440-RB | 330..1328 | 12..1002 | 4645 | 98.3 | Plus |
| CG1440-RD | 2394 | CG1440-RD | 428..1425 | 13..1002 | 4640 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:26:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8439109..8439758 | 13..662 | 3250 | 100 | Plus |
| X | 23542271 | X | 8439817..8440166 | 661..1002 | 1205 | 94.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:26:12 has no hits.
FMO06056.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:32:33 Download gff for
FMO06056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1440-RA | 204..1159 | 1..952 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:57:46 Download gff for
FMO06056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1440-RA | 204..1159 | 1..952 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:22:39 Download gff for
FMO06056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1440-RA | 227..1182 | 1..952 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:22:39 Download gff for
FMO06056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8439106..8439758 | 8..662 | 99 | -> | Plus |
| X | 8439819..8440112 | 663..952 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:32:33 Download gff for
FMO06056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8333139..8333791 | 8..662 | 99 | -> | Plus |
| arm_X | 8333852..8334145 | 663..952 | 96 | | Plus |
