FMO06060.5prime Sequence
924 bp (924 high quality bases) assembled on 2008-09-15
> FMO06060.5prime
CAGTCGACATGCGGTCGTTGGTCTCGGTTGCTTTGTTATCTTTGTTAACT
TTGTGTGTTACAGAAAATGAACACTTTAAGTTTTTAGAGACTCCTTGTGG
GATATCAACCCGTCCCAAAATTAGCGGTGGTGACGATGCAGCCGAGCCAA
ATTCTATATGGATGGCAGCGATATTCAATTCATCCGATTTTCAATGCGGT
GGCACAATTATACATATGCGTTTTGTGTTAAGTGCTGCTCATTGCTTGGT
AAGAGGATATGATCTATACGTGAGGTTGGGGGCACGCAACATAAATGAGC
CCGCTGCTGTCCACACAGTCATTAATGTCTTTGTGCACCATGACTTCATT
GCATCGGAATACCGAAATGATATAGGACTGCTTCAACTGTCGGAGAGTAT
CGTCTACACAGTTCGAGTTCAACCAATTTGCATCTTTTTGGATCCGGCTC
TCAAAGGGAGTGTTGAAAAATTGAAAACGTTCAGAGCCCTTGGCTGGGGA
AATAGGAACGGAAAATTGAGCATAATGTTGCAAACCATCTATCTTCTACA
CTTGAAAAGAAATGAGTGCAAACGCAAATTGAACTTTAATCTCAATTCAA
GACAGATTTGCGCTGGAACCAAAAATGGAGACACCTGTAGAGGCGATTCT
GGGGGTCCCTTGTCCACGAATATATTGTTTTCCTTCCAATAAAAGTTATG
AGGTGCAGTTAGGAATCGTAAGCTTTGGGGATCCAGAATGCCGTGGAGTA
GGAGTCTATACCGACGTGACCAGCTATGTGGATTGGATCTCATCGACAAT
AGCTAGAAATGACTACCTACCAATCGCGTGTCCGGGGGAGACATTGCATG
GGCAATCCCATTGCTCTGACGCTATTCGGCACTGGACTCCTGCCGCTTCA
CCACCACCTCCTTCCATGTTGTAC
FMO06060.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10764-RA | 1700 | CG10764-RA | 24..941 | 9..924 | 4435 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17454224..17454741 | 409..924 | 2335 | 98.5 | Plus |
| 2R | 25286936 | 2R | 17453422..17453635 | 9..222 | 1070 | 100 | Plus |
| 2R | 25286936 | 2R | 17454029..17454174 | 266..411 | 730 | 100 | Plus |
| 2R | 25286936 | 2R | 17453896..17453953 | 220..277 | 245 | 94.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:43:30 has no hits.
FMO06060.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:00 Download gff for
FMO06060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10764-RA | 21..941 | 6..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:57:33 Download gff for
FMO06060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10764-RA | 1..921 | 6..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:28 Download gff for
FMO06060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10764-RA | 21..941 | 6..924 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:28 Download gff for
FMO06060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17453419..17453632 | 6..219 | 99 | -> | Plus |
| 2R | 17453896..17453941 | 220..265 | 100 | -> | Plus |
| 2R | 17454029..17454174 | 266..411 | 100 | -> | Plus |
| 2R | 17454227..17454741 | 412..924 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:00 Download gff for
FMO06060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13340924..13341137 | 6..219 | 99 | -> | Plus |
| arm_2R | 13341401..13341446 | 220..265 | 100 | -> | Plus |
| arm_2R | 13341534..13341679 | 266..411 | 100 | -> | Plus |
| arm_2R | 13341732..13342246 | 412..924 | 98 | | Plus |
