FMO06061.5prime Sequence
922 bp (922 high quality bases) assembled on 2008-09-15
> FMO06061.5prime
CAGTCGACATGCCGCTCTTCACTAGAAAATCACCCAAGCAAGGACCCACC
TCGGATGGGGGCTCCCAGTTCGGCAGTCGCTCCTCCATGAACTCCGGGTC
CTCCCAGGGCAGCCACATTAGCAATAACAACAACAACAGCATTCCGGAGA
AAACAAAGCCCCCGCTGGTCTTCCACTGCCAACTGGCCCACGGCAGTCCC
ACCGGTCTAATCCACGACTTCTCCAGCGTTCGAGAGCTGTACCAGAAGAT
TGCCGAGTGCTTTGACATATCCGAGAAGGACATTCTCTTCTGCACCCTCA
ACTCGCACAAGGTGGACATGACGCGTCTGCTGGGCGGGCAGATCGGGCTG
GACGACTTTATATTCGCCCATCGCAAAGGTCGGCCCAAGGAGATCGAGAT
TGTGAAGTCGCAGGATGCCCTCGGACTGACGATCACCGACAACGGGGCCG
GCTACGCCTTCATAAAGCGGATCAAGGAGGACTCGATCATCGATCGCATC
GAGCACATCAGCGTTGGCGATCACATCGAGAAGCTCAACGGCCAGAATAT
GGTGGGCAAGCGGCACTACGAGGTGGCGCGCATGCTGAAGGACATTGCCA
CCGGGGAGACCTTCACCCTGCGCCTGGTGGAGCCAGTGCGAAGCGGCTTC
CAGGGCATCGGACCGCGCAGCCAGTCAAGGGCGTCGGGCTCGGCCGGAGG
AAAGAACTATGGCAGCGGCAAGGAGACGCTGCGGTTCAAGGCCAATGGCA
TGCCCAGATCGAGCCGCAGTTCGATGAGGCGACTGTGGCCGGTATCGAGG
CCATTTAATAACCCTGCTGGAGTCCTTCATGGGCATCAACGACACGGAGC
TGGCGTCCCAGATCTGGGGACTTGGGCGACCAAAAGTCCAACTCATGGAA
CTTCCCCGAGGCCCTCGACACT
FMO06061.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:57:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kermit-RE | 1661 | CG11546-RE | 295..1205 | 8..920 | 4380 | 99 | Plus |
| kermit-RC | 1722 | CG11546-RC | 356..1266 | 8..920 | 4380 | 99 | Plus |
| kermit-RD | 1606 | CG11546-RD | 240..1150 | 8..920 | 4380 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:57:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8147374..8148284 | 920..8 | 4280 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:57:42 has no hits.
FMO06061.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:10 Download gff for
FMO06061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kermit-RD | 232..1153 | 1..922 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:57:51 Download gff for
FMO06061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kermit-RD | 198..1119 | 1..922 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:57 Download gff for
FMO06061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kermit-RD | 232..1153 | 1..922 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:57 Download gff for
FMO06061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8147371..8148292 | 1..922 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:10 Download gff for
FMO06061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4034876..4035797 | 1..922 | 98 | | Minus |
