FMO06063.5prime Sequence
577 bp (-63 high quality bases) assembled on 2008-09-15
> FMO06063.5prime
CCTATAGGGAAGTTATCAGTCGACATGCCCGTGGGTACGTTTGACGCCTG
GGATGCGGCCGTGCTGATCACCATCCTGGTCATATCGGCTCTGATTGGCA
TCTACTACCGGTATACAGGCGGCAAGCAAAAGACCACACAGGAGTATCTG
ATGGCGGACCAGAGCATGACCACTTTTCCGGTCTCCTTCAGCCTGATGGC
AAGCTTCATGTCCGCCATCTCACTGATGGGCGTCTCCAACGAGTCCTACG
AATTTGGTACCATCTTCTGTGTGATCAACATTGCCTACGTGCTGAGTACG
CCCATTGCCGCGTACTTCTTCCTTCCTGTTTTCTACAGGATGCGGACGAC
CAGTGTGTACGAGTATCTGGAGCGGCGCTTTGGCCAGGCCACCCGGCTGT
CCGCCTCCCTGGCCTTCACCGTGCAAATGGTGCTTTACATGGGCATTGCA
CTCTATGCACCAGCGCTCGCTTTAGAAGCTGTAACCGGCATTCATCGGTC
AATGGCCATCGTGGTCATTGGACTGGTGTGCACCTTCTATTCGACACTTG
GCGGCCTGAAGGCGGTGCTCATCACGG
FMO06063.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10444-RA | 2790 | CG10444-RA | 260..814 | 23..577 | 2760 | 99.8 | Plus |
| CG32669-RA | 2385 | CG32669-RA | 317..709 | 185..577 | 370 | 73.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20273686..20274240 | 577..23 | 2760 | 99.8 | Minus |
| X | 23542271 | X | 10844373..10844765 | 577..185 | 345 | 72.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:57:32 has no hits.
FMO06063.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:20:25 Download gff for
FMO06063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10444-RA | 255..814 | 17..577 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:57:54 Download gff for
FMO06063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10444-RA | 281..840 | 17..577 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:44:18 Download gff for
FMO06063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10444-RA | 255..814 | 17..577 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:44:18 Download gff for
FMO06063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20273686..20274245 | 17..577 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:20:25 Download gff for
FMO06063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16161191..16161750 | 17..577 | 99 | | Minus |
