FMO06064.5prime Sequence
639 bp (639 high quality bases) assembled on 2008-09-15
> FMO06064.5prime
CAGTCGACATGCAGTCACGTTGGCTTTGCGGGATCTTCGTGATCGTCCTG
GCCCATTGGACACGGGCCAATCCAATTTTGAGCCATCCCAAAGTGGCCAC
CGAGTTCATCATCCTCCATAATAATGATATGCATGCCCGTTTCGATCAGA
CGAGCGTTAATAGCGGCACCTGCCCACCGGAGGATGTACATACGAATAAA
TGCTATGGAGGATTCGCCAGGGTGGCCCACGAAGTTCGAAAGTATCGTAA
GGAGGCTCAGGAGGGCGGTACCTCCGTATTGTACTTAAATGCTGGTGATA
CCTACACTGGAACCTCTTGGTTTACTATTTTCAAGGACAAAATCGCCAGT
GCTTTCCTTAACAAATTGAAACCGGATGCTATATCCTTGGGCAATCATGA
GTTTGATGAGAGAGTAGAGGGTCTAATACCCTTCCTCAACGAGGTCACCT
TTCCTGTACTCGCCTGTAATCTGGACCTAAGCAAGGTTCCCCAACTGAAG
GCCACTTGGCACTTGGCTAACTCCGCCATTCTGGAGACCAATTGGCACTA
AGGTCGGTGTCATAGGTTATTTGACTCCAGATACCAAAAAACTTACTCTC
AACATGGATGTGGAGTTTCAACGAGGAGGTGGAGTCCAT
FMO06064.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NT5E-2-RA | 2062 | CG30104-RA | 134..762 | 9..639 | 3105 | 99.7 | Plus |
| NT5E-2-RB | 1960 | CG30104-RB | 32..660 | 9..639 | 3105 | 99.7 | Plus |
| veil-RB | 2220 | CG4827-RB | 334..721 | 91..478 | 590 | 77.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17491425..17491678 | 384..639 | 1180 | 99.2 | Plus |
| 2R | 25286936 | 2R | 17490940..17491163 | 9..232 | 1120 | 100 | Plus |
| 2R | 25286936 | 2R | 17491215..17491365 | 233..383 | 755 | 100 | Plus |
| 2R | 25286936 | 2R | 17479918..17480053 | 91..226 | 275 | 80.1 | Plus |
| 2R | 25286936 | 2R | 17480121..17480248 | 237..364 | 235 | 78.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:42:55 has no hits.
FMO06064.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:36 Download gff for
FMO06064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NT5E-2-RB | 27..660 | 2..639 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:57:56 Download gff for
FMO06064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30104-RB | 32..665 | 2..639 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:08 Download gff for
FMO06064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NT5E-2-RB | 27..660 | 2..639 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:08 Download gff for
FMO06064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17490940..17491163 | 9..232 | 100 | -> | Plus |
| 2R | 17491215..17491365 | 233..383 | 100 | -> | Plus |
| 2R | 17491425..17491678 | 384..639 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:36 Download gff for
FMO06064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13378930..13379183 | 384..639 | 99 | | Plus |
| arm_2R | 13378445..13378668 | 9..232 | 100 | -> | Plus |
| arm_2R | 13378720..13378870 | 233..383 | 100 | -> | Plus |
