FMO06066.5prime Sequence
801 bp (798 high quality bases) assembled on 2008-09-15
> FMO06066.5prime
CAGTCGACATGATCCGCCCCACTCTTATCGTAGTGCTCATCTCACTGGCC
AGTGTCGATTCCGGCCACAACTCACCCGTGACCACCATCCCGGTGGCCGA
GCCCATCAGCCAGGTGCCCCACGGCTTCCAACTCGGCCAAAACAATCACA
TCAGCAGCAGCAGCAACATTAGCCGGAGTGGAGGCGGAAATGGCCGTGAT
AAGAGAGGCGCCCAACTGGATCCCAGCGAGATTGCCCGCCAGAATCAGAT
AACCCAGCAGATATTCGCCAACTATTTGGAGCGTCGGTTGTTTCCCAATC
GCACGGCCAACCAAAAGATTCCCACCATCGCGGACATCCTGCCCAAGCCG
AAGCCATCGCCACGACCCCGTCCTCGAGGATTCGCGGCCAGCGATGGTGG
AAACTTCAAGAGGAGTGGAGGTGGAGCTCAAAGGAACCGCCTGGCAGCTG
CCGCCTCCAAGAGGCAGTCGGGCTACAATCGCAAGCGATTGCGGGAGGAA
CAGGAGGAGGAGGAGGAGGCCGACGACCAGGAGCGGGATCAGCAGCCGCT
GGCCAACCAGGAGGACTTCGATTACGACGTGCAGGAGTCGCTGCAGAGCG
TGGAGTCGGAGCAGCACGACCAGTACTATGGGAACATATTCCATCGCGAT
CCCAGCGAGAACGAAGTCGATAATGATTGCCCCAACTGCGTGGACGAGTC
GCAGTACACGCCGAACAAGTGGACGATGCCGCTGCTGAAGCTCGGGGGAG
AAGCGCTAATACCTCGGCATCTTCTTCAAGGCAAACTGGTTCAAAGCCAC
A
FMO06066.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9134-RB | 2138 | CG9134-RB | 713..1505 | 8..801 | 3915 | 99.6 | Plus |
CG9134-RC | 957 | CG9134-RC | 198..324 | 674..801 | 600 | 98.4 | Plus |
CG9134-RA | 1254 | CG9134-RA | 495..621 | 674..801 | 600 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1261564..1262033 | 206..675 | 2350 | 100 | Plus |
3L | 28110227 | 3L | 1257161..1257361 | 8..208 | 990 | 99.5 | Plus |
3L | 28110227 | 3L | 1269070..1269175 | 675..781 | 470 | 98.1 | Plus |
Blast to na_te.dros performed 2014-11-28 19:43:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2406..2470 | 104..168 | 135 | 71.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2373 | 134..173 | 119 | 77.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2610..2655 | 129..173 | 119 | 76.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2481..2514 | 134..167 | 116 | 82.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1535..1575 | 133..173 | 115 | 75.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2338..2374 | 141..177 | 113 | 78.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2372 | 134..178 | 108 | 71.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2439..2483 | 134..178 | 108 | 71.1 | Plus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 5608..5692 | 100..187 | 108 | 61.4 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 7063..7147 | 100..187 | 108 | 61.4 | Plus |
FMO06066.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:10 Download gff for
FMO06066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9134-RB | 706..1504 | 1..800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:22:19 Download gff for
FMO06066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9134-RB | 703..1501 | 1..800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:32 Download gff for
FMO06066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9134-RB | 706..1504 | 1..800 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:32 Download gff for
FMO06066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1257154..1257360 | 1..207 | 98 | -> | Plus |
3L | 1261566..1262033 | 208..675 | 100 | -> | Plus |
3L | 1269071..1269174 | 676..780 | 98 | -> | Plus |
3L | 1272965..1272984 | 781..800 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:10 Download gff for
FMO06066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1269071..1269174 | 676..780 | 98 | -> | Plus |
arm_3L | 1272965..1272984 | 781..800 | 100 | | Plus |
arm_3L | 1257154..1257360 | 1..207 | 98 | -> | Plus |
arm_3L | 1261566..1262033 | 208..675 | 100 | -> | Plus |