Clone FMO06066 Report

Search the DGRC for FMO06066

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:60
Well:66
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG9134-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO06066.5prime Sequence

801 bp (798 high quality bases) assembled on 2008-09-15

> FMO06066.5prime
CAGTCGACATGATCCGCCCCACTCTTATCGTAGTGCTCATCTCACTGGCC
AGTGTCGATTCCGGCCACAACTCACCCGTGACCACCATCCCGGTGGCCGA
GCCCATCAGCCAGGTGCCCCACGGCTTCCAACTCGGCCAAAACAATCACA
TCAGCAGCAGCAGCAACATTAGCCGGAGTGGAGGCGGAAATGGCCGTGAT
AAGAGAGGCGCCCAACTGGATCCCAGCGAGATTGCCCGCCAGAATCAGAT
AACCCAGCAGATATTCGCCAACTATTTGGAGCGTCGGTTGTTTCCCAATC
GCACGGCCAACCAAAAGATTCCCACCATCGCGGACATCCTGCCCAAGCCG
AAGCCATCGCCACGACCCCGTCCTCGAGGATTCGCGGCCAGCGATGGTGG
AAACTTCAAGAGGAGTGGAGGTGGAGCTCAAAGGAACCGCCTGGCAGCTG
CCGCCTCCAAGAGGCAGTCGGGCTACAATCGCAAGCGATTGCGGGAGGAA
CAGGAGGAGGAGGAGGAGGCCGACGACCAGGAGCGGGATCAGCAGCCGCT
GGCCAACCAGGAGGACTTCGATTACGACGTGCAGGAGTCGCTGCAGAGCG
TGGAGTCGGAGCAGCACGACCAGTACTATGGGAACATATTCCATCGCGAT
CCCAGCGAGAACGAAGTCGATAATGATTGCCCCAACTGCGTGGACGAGTC
GCAGTACACGCCGAACAAGTGGACGATGCCGCTGCTGAAGCTCGGGGGAG
AAGCGCTAATACCTCGGCATCTTCTTCAAGGCAAACTGGTTCAAAGCCAC
A

FMO06066.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG9134-RB 2138 CG9134-RB 713..1505 8..801 3915 99.6 Plus
CG9134-RC 957 CG9134-RC 198..324 674..801 600 98.4 Plus
CG9134-RA 1254 CG9134-RA 495..621 674..801 600 98.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1261564..1262033 206..675 2350 100 Plus
3L 28110227 3L 1257161..1257361 8..208 990 99.5 Plus
3L 28110227 3L 1269070..1269175 675..781 470 98.1 Plus
Blast to na_te.dros performed 2014-11-28 19:43:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2406..2470 104..168 135 71.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2334..2373 134..173 119 77.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2610..2655 129..173 119 76.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2481..2514 134..167 116 82.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1535..1575 133..173 115 75.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2338..2374 141..177 113 78.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2328..2372 134..178 108 71.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2439..2483 134..178 108 71.1 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 5608..5692 100..187 108 61.4 Plus
TART-C 11124 TART-C TARTC 11124bp 7063..7147 100..187 108 61.4 Plus

FMO06066.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:10 Download gff for FMO06066.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9134-RB 706..1504 1..800 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:22:19 Download gff for FMO06066.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9134-RB 703..1501 1..800 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:32 Download gff for FMO06066.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9134-RB 706..1504 1..800 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:32 Download gff for FMO06066.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1257154..1257360 1..207 98 -> Plus
3L 1261566..1262033 208..675 100 -> Plus
3L 1269071..1269174 676..780 98 -> Plus
3L 1272965..1272984 781..800 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:10 Download gff for FMO06066.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1269071..1269174 676..780 98 -> Plus
arm_3L 1272965..1272984 781..800 100   Plus
arm_3L 1257154..1257360 1..207 98 -> Plus
arm_3L 1261566..1262033 208..675 100 -> Plus