FMO06068.5prime Sequence
475 bp (475 high quality bases) assembled on 2008-09-15
> FMO06068.5prime
CAGTCGACATGGATTCTAAACGCGCGGCCCTTGAATCCGGCGACGGTCCG
GACGCCAAGCGCCTTGATACCACCGATGATCAAGACAAAGAAGCGTCGGG
GGGCGACGGCAGTCAGGTTATGCTGGCCAAACACGTAGCACCCTACACGG
GCCACGGATGTACTCCACCGATGGAGTCCTATTTGTTCGAACCGACTCCC
GCCGGGAGTCAACTTCTGCCGTGGAAAACTAGCGTTGATTTGGACAACGA
CGCCGAGCTGGAGAAGCCCACCAGTGACAAGAAACCCGACACTGCCAAGT
TGTCCCGTCGGGAGCTGGCCAAAATGCGCCGTGAACACACATTAAGGGCC
CTCGCCCTGGAACGCGAGTTGACCAACAAACCGGGGCAGACACCCGCTTC
CGAAGTGTTGCTCGTCCGCTTTCCTGATCCCGAGATTACTGCTCCCATGC
TGGCAGGACTGTCCAAGGATATTCG
FMO06068.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pof-RC | 1683 | CG3691-RC | 122..588 | 9..475 | 2320 | 99.8 | Plus |
| Pof-RA | 1736 | CG3691-RA | 175..641 | 9..475 | 2320 | 99.8 | Plus |
| Pof-RB | 1959 | CG3691-RB | 126..592 | 9..475 | 2320 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24669571..24669847 | 9..285 | 1370 | 99.6 | Plus |
| 2R | 25286936 | 2R | 24669902..24670091 | 286..475 | 950 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:05:17 has no hits.
FMO06068.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:53:54 Download gff for
FMO06068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pof-RB | 126..592 | 9..475 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:58:02 Download gff for
FMO06068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pof-RA | 156..622 | 9..475 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:41:10 Download gff for
FMO06068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pof-RB | 126..592 | 9..475 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:10 Download gff for
FMO06068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24669902..24670091 | 286..475 | 100 | | Plus |
| 2R | 24669571..24669847 | 9..285 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:53:54 Download gff for
FMO06068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20557094..20557370 | 9..285 | 99 | -> | Plus |
| arm_2R | 20557425..20557614 | 286..475 | 100 | | Plus |
